Gene detail information of Glyur000989s00020266.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67850.2 | 1.00E-151 | Protein of unknown function (DUF707) |
| NR | XP_003531333.1 | 0 | PREDICTED: uncharacterized protein LOC100805311 [Glycine max] |
| COG | YP_001940717.1 | 1.00E-07 | hypothetical protein Minf_2066 [Methylacidiphilum infernorum V4] |
| trEMBL | tr|I1KSX5|I1KSX5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00989 | 72578 | 84373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000989s00020266.2 | PF05212.7 | DUF707 | 91 | 360 | 2.40E-151 |
| Glyur000989s00020266.2 | PF05212.7 | DUF707 | 406 | 506 | 3.70E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.662 |
| SRR1783600 | control | 9.843 |
| SRR1783602 | moderate drought stress | 8.405 |
| SRR1811619 | moderate drought stress | 8.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.889 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.733 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.649 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.051 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.772 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.348 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.196 |
| SRR2868004 | Drought Stress (root) | 17.635 |
| SRR2967015 | Control (root) | 17.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.707 |
| SRR9715740 | Leaf | 14.762 |
| SRR9715741 | Leaf | 7.047 |
| SRR9715739 | Root | 2.971 |
| SRR9715742 | Root | 5.861 |
| SRR9715743 | Root | 5.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 181.826 |
| SRR8749028 | MeJA induced 9h | 166.122 |
| SRR8749029 | MeJA induced 9h | 179.564 |
| SRR8749030 | Uninduced | 65.925 |
| SRR8749031 | Uninduced | 43.406 |
| SRR8749032 | Uninduced | 48.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.097 |
| SRR8400027 | Control - Root | 19.230 |