Gene detail

Gene detail information of Glyur000989s00020263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26430.1	4.00E-146	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KEH20768.1	0	GDSL-like lipase/acylhydrolase [Medicago truncatula]
Swissprot	tr\|Q9LIN2\|GDL53_ARATH	0	GDSL esterase/lipase At3g26430 (Precursor)
trEMBL	tr\|A0A072TV72\|A0A072TV72_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:KEH20768.1}

Sequence

Transcript Sequence

>Glyur000989s00020263.1
AAATATTTGAAAGGTTGTTGAGATTCCAATATTTTAATATGCAAGCATGCGCACAAACGCGGAGTGGAGATTTGTATTTGGCTATTAAATAACGGTCAACGGGGTGACTATAAACCTGTGTGAGAGGTGTTGTTCAAAGTAGATGTGATGTCAGTGGTTTTCTACATCAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGTTATGGAGGCGCTGGGAGAGAAATGGAGACAAGTTGTGTCAAGGGTTGTGATTTCAACAATACTAGTTGTAGTTATGGTAGCAAGTTCTGCCGGTGCCGCCCGTGCAAGGCAGTGTAGTTTTCCGGCCATATTCAATTTGGGAGACTCCAATTCCGACACGGGTGGTCTCTCGGCAGCTTTCGGACAAGCTCCTCCCCCCAACGGAGTCACCTTTTTCCACTCTCCTGCCGGACGCTTCTCCGATGGTCGTCTCATCATTGATTTCCTAGCTAAAAGCCTGGGGTTGCCTTACCTGAGTGCTTACTTGGACTCGGTGGGCTCAAACTTCAGTGACGGTGCCAATTTCGCTACAGCAGGATCCACCATCAGACCTCAAAACACAACCAAGTCTCAGAGTGGTTACAGCCCCATATCCCTTGATGTTCAGTTTGTTCAGTTCTCTGATTTCAAAGCAAGATCCAAACTCGCTCGCAAACAAGGAGGGGTGTTTGAGAAATTGTTGCCCAAGGAGGAGTACTTTTCTCAGGCTTTATACACCTTTGATATTGGCCAAAACGATCTCACTGCTGGCTACAAACTCAACATGACCACAGAACAAGTCAAGGCATATATACCTGATGTATTAGGCCAGTTCTCCAATGTCATAAGGGGTGTATACGGGGAAGGTGGAAGGTCGTTTTGGATTCACAACATAGGCCCACTGGGCTGCCTTCCATACATGCTGGATCGNTATCCCATGAGTGTGGCCCAAATGGATGAGTTTGGGTGTGCCAAACCATTCAACGAGGTGGCCCAATACTTTAACCGCAAACTGAATGAAGCTGTTGCGCAACTGAGGAAAGAGCTTCCAGAGGCAGCAATCGTCTATGTTGATGTGTACACAGTGAATGTTATGAAAAAATTAAATGTTTGGAATTTGGAAGGTTTCGAGAAGGGGGTGATTGCATGCTGTGGGCACGGTGGGAAGTACAACTTCGATAATGGAGCGAGATGTGGAGCTACCAAACAGGTGGATGGGAAAACGATTGTGATAGCCAAATCGTGCAAAGATCCAAGTGTGAGGATTATTTGGGATGGGATTCATTACACTGAGGCTGCTAACAACTGGATCTTCCAACAAATAGTCAATGGAAACTTTTCAGATCCACCCGTCTCTTTAAAAATGGCTTGCCATAGTCATGCATCCATCCATCCACCTGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00989	57624	60242	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GHnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000989s00020263.1	PF00657.17	Lipase_GDSL	43	374	4.50E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.395
SRR1783600	control	1.443
SRR1783602	moderate drought stress	0.606
SRR1811619	moderate drought stress	0.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.625
DRR006520	Root Summer glycyrrhizin high producing strain	7.642
DRR006521	Root Winter glycyrrhizin high producing strain	7.520
DRR006522	Root Winter glycyrrhizin high producing strain	7.466
DRR006523	Root Summer glycyrrhizin low producing strain	4.570
DRR006524	Root Summer glycyrrhizin low producing strain	4.756
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.212
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.230

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.694
SRR2868004	Drought Stress (root)	37.490
SRR2967015	Control (root)	46.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.416
SRR9715740	Leaf	3.797
SRR9715741	Leaf	9.838
SRR9715739	Root	1.693
SRR9715742	Root	3.418
SRR9715743	Root	3.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.964
SRR8749028	MeJA induced 9h	53.215
SRR8749029	MeJA induced 9h	52.070
SRR8749030	Uninduced	11.912
SRR8749031	Uninduced	9.085
SRR8749032	Uninduced	5.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.007
SRR8400027	Control - Root	4.385