Gene detail information of Glyur000989s00020261 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57290.3 | 7.00E-20 | 60S acidic ribosomal protein family |
| NR | KHN29021.1 | 4.48E-34 | 60S acidic ribosomal protein P3 [Glycine soja] |
| Swissprot | tr|Q9LVC9|RLA32_ARATH | 4.00E-32 | 60S acidic ribosomal protein P3-2 |
| trEMBL | tr|I1KSX0|I1KSX0_SOYBN | 2.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G13970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00989 | 49195 | 50810 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000989s00020261.1 | PF00428.14 | Ribosomal_60s | 76 | 121 | 1.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.560 |
| SRR1783600 | control | 55.866 |
| SRR1783602 | moderate drought stress | 67.826 |
| SRR1811619 | moderate drought stress | 67.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 132.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 131.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 92.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 91.735 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.342 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 345.829 |
| SRR2868004 | Drought Stress (root) | 208.933 |
| SRR2967015 | Control (root) | 198.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 133.824 |
| SRR9715740 | Leaf | 104.576 |
| SRR9715741 | Leaf | 106.324 |
| SRR9715739 | Root | 421.722 |
| SRR9715742 | Root | 217.132 |
| SRR9715743 | Root | 243.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 226.723 |
| SRR8749028 | MeJA induced 9h | 56.163 |
| SRR8749029 | MeJA induced 9h | 127.248 |
| SRR8749030 | Uninduced | 12.717 |
| SRR8749031 | Uninduced | 5.601 |
| SRR8749032 | Uninduced | 25.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 274.578 |
| SRR8400027 | Control - Root | 199.416 |