Gene detail information of Glyur000989s00020260 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26380.1 | 0 | Melibiase family protein |
| NR | XP_003525035.1 | 0 | PREDICTED: uncharacterized protein LOC100783705 [Glycine max] |
| COG | YP_004042752.1 | 4.00E-64 | glycosyl hydrolase family 98 carbohydrate binding module [Paludibacter propionicigenes WB4] |
| Swissprot | tr|Q42656|AGAL_COFAR | 1.00E-20 | Alpha-galactosidase (Precursor) |
| trEMBL | tr|I1K4F3|I1K4F3_SOYBN | 0 | Alpha-galactosidase {ECO:0000256|RuleBase:RU361168} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00989 | 43020 | 48463 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000989s00020260.1 | PF02065.13 | Melibiase | 38 | 142 | 0.00011 |
| Glyur000989s00020260.2 | PF02065.13 | Melibiase | 38 | 142 | 0.0001 |
| Glyur000989s00020260.3 | PF02065.13 | Melibiase | 38 | 142 | 5.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.207 |
| SRR1783600 | control | 25.382 |
| SRR1783602 | moderate drought stress | 17.137 |
| SRR1811619 | moderate drought stress | 17.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.694 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.674 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.894 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.200 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.783 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.878 |
| SRR2868004 | Drought Stress (root) | 11.936 |
| SRR2967015 | Control (root) | 11.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.489 |
| SRR9715740 | Leaf | 5.489 |
| SRR9715741 | Leaf | 3.975 |
| SRR9715739 | Root | 1.286 |
| SRR9715742 | Root | 11.951 |
| SRR9715743 | Root | 9.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.079 |
| SRR8749028 | MeJA induced 9h | 7.803 |
| SRR8749029 | MeJA induced 9h | 6.651 |
| SRR8749030 | Uninduced | 1.137 |
| SRR8749031 | Uninduced | 1.828 |
| SRR8749032 | Uninduced | 0.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.039 |
| SRR8400027 | Control - Root | 42.153 |