Gene detail

Gene detail information of Glyur000989s00020259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71190.1	2.00E-92	senescence associated gene 18
NR	XP_004504135.1	1.44E-155	PREDICTED: uncharacterized protein LOC101501512 [Cicer arietinum]
trEMBL	tr\|A0A072U4J5\|A0A072U4J5_MEDTR	2.00E-145	Alkaline phytoceramidase (APHC) {ECO:0000313\|EMBL:KEH20750.1}

Sequence

Transcript Sequence

>Glyur000989s00020259.1
TGAAAAAATAAAAAGTAGTAACAGAGTTAGTCATCTACTCATCTTGTGCGGTCCTCCTTGGGTGATGGCGGCTATCGCCACCGCCACCGTCACGCCGCCCGCCGCCACCGCCACCGCCACCGTCATCGTCATCGCATTTATTCTACATGATACCTTCCGTGGCCTCTTTCTCTCACTGTCTGATTCTCTCTCCTCCCATTCCCATCTACTCTGCTGCAAGAAGAATGAGAAAACGCACTGCACAGGCATGTGGAGCTGCGGTTGCTTGCTTCATTTTACTGATGATGCTAACACCACGCATTCCTCAACCTCAGCGATACCATGATTTCGCTGACAAGCGCGAATTCTTTGGCATTCCTAATGCATTTAATGTGATATCAAATTTCCCATTCATGGTTATTGGTCTCATTGGGCTTATACTTTGTCATCATGGGGACTATTTTAAGTTCAGTTTGCAAGGTGAGGTATGGGGTTGGACATGCTTTTATGTTGCTGTGGCTTCAGTCGCTTTTGGGTCTTCATACTATCATCTCGGGCCAAACGATAATGGTCTTGTGTGGGACAGGTTACCGATGACTGTTGCTTTCACGTCATTGATGGCGATCCTCATCATTGAAAGGATTGATGCGAAGAAGGGAACCATTTCCATTTTACCTCTAGTTTTGGCGGGTATAATAAGCAGTGTGTATTGGAGGCAAGCTAATCCTTCATGTCTTTTACTTGGGACAGAGTTCTATGGTGACATCCGTCCTTATATTCTGGCCCAAACTGTGTCATGCATTGCCATACCTCTCATGGCTTTTTTGTTGCCTCCAATGTACACACATTCAACGTATTGGCTCTGGGCTGCAGGGTTTTATCCTATAGCTATGCTGCAAGAGACTGCCGATAGATTGATTTATGCAGGGACTTTTCATATGGTCAGTGGTCATACACTTAAGCATTTGACTGCTGCAATGGTTCCTGTCATCTTAACAGTAATGCTTGCAAAGAGAGGTGTTTACTTGGGAAGGCTCTTGCATGCAAAATCTGCTTAACACACACACAGCATTTGATCTCAATGTGCAGGTTTTGTAGTCTCAGTAATGTCGTCTCTTCTCTCCCTAGAAGTAAANATAAGAAAGGTTAAATAAGAAAGGTTAAGCTACTAAGGGCAGGTTTGTGGTAATTGGTAAGTAGCTTGATTAGTTTGTTAGAGATTATATGCTCAAACTTCTGTGCTTTAGTTGTACTGAAAGATAGAAAGAAGGAAGGTGAACGAAATTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00989	35824	38990	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006672 ceramide metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000989s00020259.1	PF05875.7	Ceramidase	73	187	2.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.981
SRR1783600	control	2.007
SRR1783602	moderate drought stress	3.190
SRR1811619	moderate drought stress	3.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.033
DRR006520	Root Summer glycyrrhizin high producing strain	3.234
DRR006521	Root Winter glycyrrhizin high producing strain	11.682
DRR006522	Root Winter glycyrrhizin high producing strain	11.158
DRR006523	Root Summer glycyrrhizin low producing strain	1.243
DRR006524	Root Summer glycyrrhizin low producing strain	1.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.178

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.116
SRR2868004	Drought Stress (root)	1.157
SRR2967015	Control (root)	1.419

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.424
SRR9715740	Leaf	2.381
SRR9715741	Leaf	1.009
SRR9715739	Root	0.559
SRR9715742	Root	0.706
SRR9715743	Root	1.126

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.657
SRR8749028	MeJA induced 9h	1.523
SRR8749029	MeJA induced 9h	2.728
SRR8749030	Uninduced	2.592
SRR8749031	Uninduced	2.030
SRR8749032	Uninduced	3.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.159
SRR8400027	Control - Root	3.663