Gene detail information of Glyur000989s00020256 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13040.1 | 2.00E-173 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004504137.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9SAD9|PPR40_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g13040, mitochondrial (Precursor) |
| trEMBL | tr|I1KSW6|I1KSW6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G13930.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00989 | 23150 | 24733 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000989s00020256.1 | PF01535.15 | PPR | 26 | 50 | 0.006 |
| Glyur000989s00020256.1 | PF13041.1 | PPR_2 | 123 | 172 | 1.80E-15 |
| Glyur000989s00020256.1 | PF12854.2 | PPR_1 | 226 | 252 | 1.40E-07 |
| Glyur000989s00020256.1 | PF13041.1 | PPR_2 | 264 | 313 | 2.10E-16 |
| Glyur000989s00020256.1 | PF13041.1 | PPR_2 | 335 | 381 | 1.40E-17 |
| Glyur000989s00020256.1 | PF13041.1 | PPR_2 | 404 | 453 | 8.30E-17 |
| Glyur000989s00020256.1 | PF01535.15 | PPR | 477 | 507 | 0.0058 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.722 |
| SRR1783600 | control | 3.127 |
| SRR1783602 | moderate drought stress | 6.802 |
| SRR1811619 | moderate drought stress | 6.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.762 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.682 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.775 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.686 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.718 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.290 |
| SRR2868004 | Drought Stress (root) | 6.387 |
| SRR2967015 | Control (root) | 6.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.147 |
| SRR9715740 | Leaf | 1.718 |
| SRR9715741 | Leaf | 1.721 |
| SRR9715739 | Root | 1.172 |
| SRR9715742 | Root | 2.603 |
| SRR9715743 | Root | 2.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.341 |
| SRR8749028 | MeJA induced 9h | 3.878 |
| SRR8749029 | MeJA induced 9h | 1.309 |
| SRR8749030 | Uninduced | 0.416 |
| SRR8749031 | Uninduced | 0.467 |
| SRR8749032 | Uninduced | 0.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.015 |
| SRR8400027 | Control - Root | 9.396 |