Gene detail

Gene detail information of Glyur000989s00020253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14420.4	8.00E-149	RING domain ligase2
NR	KEH20743.1	0	E3 ubiquitin-protein ligase RGLG2-like protein [Medicago truncatula]
Swissprot	tr\|Q9LY87\|RGLG2_ARATH	0	E3 ubiquitin-protein ligase RGLG2
trEMBL	tr\|A0A072TV45\|A0A072TV45_MEDTR	0	E3 ubiquitin-protein ligase RGLG2-like protein {ECO:0000313\|EMBL:KEH20743.1}

Sequence

Transcript Sequence

>Glyur000989s00020253.1
ATGGTTTTGCAATTGCAGCTGGATTCTTGGACAGCTTTGTTTGTAATTTTGTGTTTCCTTGCATTGGTTCTAAAGGAGACGGTGATGGGAGGTAAGAGTTCAAAAGGGTCTGAGAGGAGACATGTTTCACAAAATGGGTATGCTGGTTCTTCTTCTTCTGCTTCTTCATCATCTTCATGGGATAATAACTATGGATACCCACAATCATCATATCCATACCCACAACAACAAAGTCCATATCATACGCCTCTTCACCACCGTGCACAGGCTCAGTTACACGACTATGCACGGCCAAAAAGGAGGTTAGATAGGAAATATTCCAGGATAGCTGATGATTACCGTTCACTGGACGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGATCGTTCAATCGAAAAAGTTTGCATCACATTGGACTCGGTCAAAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAATTCTTTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATTCAGATGACAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCACAATATAGAGAGATTGTTCCTCGCCTTCGACTTGCAGGACCCACCTCATTTGCCCCTATTATTGAGATGGCAATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAGCATGGCCAGCTAAGTCCACAAGAACAAAGGACAATTGATGCAATTGTAAAAGCCAGTGAATATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCGTGGGATATGATGAAGGAATTTGATGATAACATTCCAGCTCGGGCCTTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAAGAGTGTGGATTCAAACCGAAAAGAGACGGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCCTAGATCACGGCATATTGGGCGCACGGAGGGGACATTCACCGGACAGAGTTCCTTTACCTCCACCTCAATATGATAGGGCTTCTTCTAGCAGCAACACATCTTTTCGTTCAAACAGTTTTCAGCAGAGTGCACATACATATGCTGGCTATGACAATGAAGTTAACACAGAACCATCTTCAGGTGGCTCATATGACAATAAGGTTTGCCCGATTTGTCTTACTAATGGAAAGGATATGGCCTTTGGTTGTGGGCATCAGGGAAAGGGAAGCAAAGAGATGAGCAAGGCTGGCTTGGATCTTGTTGGCTTGGATCTTGATGGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00989	1006	5369	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000989s00020253.1	PF07002.11	Copine	155	303	2.20E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.063
SRR1783600	control	1.989
SRR1783602	moderate drought stress	2.333
SRR1811619	moderate drought stress	2.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.707
DRR006520	Root Summer glycyrrhizin high producing strain	1.541
DRR006521	Root Winter glycyrrhizin high producing strain	1.977
DRR006522	Root Winter glycyrrhizin high producing strain	2.113
DRR006523	Root Summer glycyrrhizin low producing strain	5.202
DRR006524	Root Summer glycyrrhizin low producing strain	5.103
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.530

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.908
SRR2868004	Drought Stress (root)	30.800
SRR2967015	Control (root)	20.850

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.098
SRR9715740	Leaf	3.795
SRR9715741	Leaf	15.332
SRR9715739	Root	0.644
SRR9715742	Root	2.098
SRR9715743	Root	2.610

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.454
SRR8749028	MeJA induced 9h	21.399
SRR8749029	MeJA induced 9h	15.225
SRR8749030	Uninduced	26.126
SRR8749031	Uninduced	44.224
SRR8749032	Uninduced	12.799

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.290
SRR8400027	Control - Root	6.119