Gene detail

Gene detail information of Glyur000988s00029119

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13350.1	3.00E-74	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
NR	XP_004499691.1	1.41E-150	PREDICTED: high mobility group B protein 10-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LTT3\|HMG10_ARATH	1.00E-90	High mobility group B protein 10
trEMBL	tr\|I1KFV6\|I1KFV6_SOYBN	6.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G48010.1}

Sequence

Transcript Sequence

>Glyur000988s00029119.1
ATGGTTTTAGAATAGTATAAGGTCATTGGTATTGTATTGAGGTGAATGCATAGATTAGGATTTAGGAATAAGAAGAGAAAAATAAAAATGACAAGTAACTCAGACACACACACAGAGACTCAGGCACAGACACAGCAGCAACAGCTTCGGAATCAAAATCAGAATTATCCTCCGCCAACAGCTCTCTATCGAGACCTTACTCGTGATGCTAACCTCTTCACTGAAAAGCTTCAATCTTTTCACAAATCATTTGGTACCAAATTGAAGGTTCCTACTATAGGAGGAAAGCCGCTAGATCTATATCGCCTTTTCATAGAAGTAACATCTCGTGGTGGTTTGGAGAAGGTGATTGTAGATCGCAAATGGAAGGAAGTGATTCTGACCTTCAAGTTCCCAGATACCATAACAAGCGCATCATTCATGGTGCGCAGGTACTATCTATCCTTGCTTTATCACTTTGAGCAAGTGTATTATTTTCGCAAGCAGGTCCCTCCTTCCTCAACACTTGATCCTGGGAATAGGAGCCTTGCCAATAGCTCCACGACCAATAGAGAAGGTGCTGCTATTGATGATTTACCTGTTCAGGTTAGTCCGGCACAGCCACTTGGTTCTGCNGTGCAGGGAACAATTGATGGGAAATTTGAAGGTGGCTATATAGTTTCAGTGAACCTGGGTTCTGAGCAGCTGAAAGGTATCCTGTATCATATTCCTAGTAATGTGTCTCGGAGTTCTCACGCTGAAGGCACGCCTGCTTCGAAGAACCGAAAGAGATTGAGATCGGCATCAGGTGATCCATCTCGGCCGAAATCAAACAGGAGTGGTTACAATTTCTTCTTCGCTGAGAATTATGCCAGGCTGAAGCCCTCATATTATGGNCAAGAAAGAGCAATTAGTAAGAGCATTGGGTATCTGTGGAGCAATCTGACAGAAGCAGAAAGACAGGTACAGATGCACACTATTTACCATTGATGCAGTAAGAGGATTGGCTTTTGTTTTTCTGAAGATTCCTTTTTTCTTTTTGTAACTCAATATACTGGTATTTACCATTAATGATATGTATGATGGTATTGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00988	96686	99323	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000988s00029119.1	PF01388.16	ARID	53	139	1.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.248
SRR1783600	control	7.926
SRR1783602	moderate drought stress	10.046
SRR1811619	moderate drought stress	10.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.514
DRR006520	Root Summer glycyrrhizin high producing strain	14.912
DRR006521	Root Winter glycyrrhizin high producing strain	17.238
DRR006522	Root Winter glycyrrhizin high producing strain	17.198
DRR006523	Root Summer glycyrrhizin low producing strain	10.629
DRR006524	Root Summer glycyrrhizin low producing strain	10.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.736

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.402
SRR2868004	Drought Stress (root)	16.059
SRR2967015	Control (root)	17.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.696
SRR9715740	Leaf	14.723
SRR9715741	Leaf	15.282
SRR9715739	Root	2.361
SRR9715742	Root	7.180
SRR9715743	Root	6.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.098
SRR8749028	MeJA induced 9h	26.902
SRR8749029	MeJA induced 9h	37.645
SRR8749030	Uninduced	24.904
SRR8749031	Uninduced	20.268
SRR8749032	Uninduced	28.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.291
SRR8400027	Control - Root	20.533