Gene detail information of Glyur000988s00029118 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55670.1 | 3.00E-57 | photosystem I subunit G |
| NR | XP_004499692.1 | 1.90E-87 | PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9S7N7|PSAG_ARATH | 2.00E-74 | Photosystem I reaction center subunit V, chloroplastic (Precursor) |
| trEMBL | tr|I3T1E8|I3T1E8_MEDTR | 4.00E-86 | Uncharacterized protein {ECO:0000313|EMBL:AFK46340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00988 | 87178 | 87660 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000988s00029118.1 | PF01241.13 | PSI_PSAK | 62 | 156 | 1.80E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.049 |
| SRR1811619 | moderate drought stress | 0.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.405 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.393 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.168 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.227 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1799.251 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1793.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.039 |
| SRR2868004 | Drought Stress (root) | 51.626 |
| SRR2967015 | Control (root) | 18.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1980.357 |
| SRR9715740 | Leaf | 1627.672 |
| SRR9715741 | Leaf | 1359.915 |
| SRR9715739 | Root | 0.273 |
| SRR9715742 | Root | 1.809 |
| SRR9715743 | Root | 1.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.070 |
| SRR8749028 | MeJA induced 9h | 7.468 |
| SRR8749029 | MeJA induced 9h | 2.905 |
| SRR8749030 | Uninduced | 4.362 |
| SRR8749031 | Uninduced | 0.635 |
| SRR8749032 | Uninduced | 4.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.804 |
| SRR8400027 | Control - Root | 11.431 |