Gene detail

Gene detail information of Glyur000988s00029109

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52890.2	2.00E-122	KCBP-interacting protein kinase
NR	AES68570.2	0	Serine/Threonine-kinase KIPK-like protein [Medicago truncatula]
COG	YP_004179918.1	1.00E-12	serine/threonine protein kinase [Isosphaera pallida ATCC 43644]
Swissprot	tr\|Q9LFA2\|KIPK_ARATH	7.00E-152	Serine/threonine-protein kinase KIPK
trEMBL	tr\|G7J0G5\|G7J0G5_MEDTR	0	Serine/Threonine-kinase KIPK-like protein {ECO:0000313\|EMBL:AES68570.2}

Sequence

Transcript Sequence

>Glyur000988s00029109.1
ATGGATACCTCAGCCAGTACATGTGAGATAGTGGAATCAAGGGATGAGATAGTTTCCGAGTTTGATACGGATGAAAAACCTGAGAGTAGTTGTTCCCAAAAATCAGGAAAAAAGTATTCGATTGAGGATGATATTAATAGACTTTTCCGGGCTATCGAGATCAAAAGTTCATCTAGAGGTCTTAGTACATCGCGATCACAAAAGAGTGCTCTTAAAAGGCCAATAAAAGTCAGTCCATCTCAGGCATCAGGAATCGGGATCTCGGAGCCTGTAAGTTTGAAGAAGGCACTTAGAGGGCTGTGCATCTCTCAGGCATCGGAAATGGCTGCTTTGAAGAGACTATCAAAGCCGTGCAGTTCTTCAAGAGTATCAGAGGCTGGCACCATCAAAAAGTTGTATACTGCAGTGGTAGATGAGGGGAATAGGAACTTGGTGGAAATCTCCCTAGTGCCAGAGATATCTGCACCTTCTGATAAACCGCCTGGTATAGAAGTATCAATTTCAAGTGCTAATCATTCTATTCCTTCGGTCGATGCAACAAACTCAAAAGAAATGACAACCAGGCAAGTAAAGCTTGTCCCAATTCTTCAATGCCAGATAAGGGGCACGAAACAAATCACTGGTAGTGGTAATGGAGTGGATAAACCCTCAAGCAGTCATACATGTTTTGCAAAGCCAATATTCAATAACATGAACTTCCTTAAGAAAAAGGAGACCAGCAATTCTGATTTGAAGCATGAAGTGAAAGAAAATGATAAACCGTCTCCCAGCAGTTCAAATCATAGCATTGAAGTTAACTCAATTAATGTTAGTACTGGTTCAAGTAAACCTGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCCCAGAGCTCAAAAAGTAGCATTGGTGAATATAGTAGTAGCACAAGCATCAGTGAGGAGAGCAACCTAAGTGGTTCCAATCGCAGTGGCCACAGACCGCACATTGGAGACATTGGAACTGTTTATCTTGCAGAGTTAATCGGTACAAGCTGCCTTTTTGCAGTGAAAGTGATGGACAATGAAGTTTTGGCAAGCCGGAAGAAAATGTTCAGGTATTGTCCAGGTGGGGATCTTCATGTGCTGCGACAGAGGCAACCATATAGGAGCTTCTCAGAACAAGCAGCTAGGTTTTATGTTGCTGAGGTTCTTCTTGCTCTAGAGTATTTGCACATGCTGGGAGTTGTATATCGAGATCTAAAGCCAGAAAATATCCTAGTACGCGAAGATGGCCACATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTGAAGTCATCTTCGCCTGAGATGGATGCAACAAAGAAGATGTCCAGTCCCTGTTCGGAGGCTAGCTGCATACACCCTTTCTGTCTCCAACCAGATTGGCAAGTCTCCTGCTTTACTCCTATTCTATTATCCGCCGGAGCAAAATCTCGAAAGATGAAGGCTGACATAGGTGCTCAAGTTGGTCCACTGCCACAGCTTGTGGTGGAGCCTACCAATGCACGGTCCAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAAGGTGATGGTCATGGGAGTGCTGTAGATTGGTGGACTTTCGGCATATTTTTGTTTGAGCTTTTGTATGGTAACACTCCATTCAAGGGCCCAACAAATGAGGATACATTAGCCAATATTGTGTCGCAGAGCCTTAAGTTCCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGCTGATAAAGGATCCTGAAAATCGATTAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCACCACCTGAGCTCCCCAAGTTTCGTGATTTTGGAACTAGTGCTCCATCTATGGCTGCACAGAAGGAGAATGCAAATGGTTTAGAGGATACAGAAGTTTGTGAAGAGTTTGAGCTGTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00988	10642	13592	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000988s00029109.1	PF00069.20	Pkinase	363	436	3.30E-19
Glyur000988s00029109.1	PF00069.20	Pkinase	513	608	1.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.752
SRR1783600	control	10.883
SRR1783602	moderate drought stress	19.160
SRR1811619	moderate drought stress	19.294

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.801
DRR006520	Root Summer glycyrrhizin high producing strain	18.841
DRR006521	Root Winter glycyrrhizin high producing strain	11.750
DRR006522	Root Winter glycyrrhizin high producing strain	11.741
DRR006523	Root Summer glycyrrhizin low producing strain	19.926
DRR006524	Root Summer glycyrrhizin low producing strain	20.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.329
SRR2868004	Drought Stress (root)	9.537
SRR2967015	Control (root)	12.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.697
SRR9715740	Leaf	6.124
SRR9715741	Leaf	8.844
SRR9715739	Root	5.666
SRR9715742	Root	17.258
SRR9715743	Root	15.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.721
SRR8749028	MeJA induced 9h	6.971
SRR8749029	MeJA induced 9h	3.199
SRR8749030	Uninduced	3.687
SRR8749031	Uninduced	0.964
SRR8749032	Uninduced	1.401

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.853
SRR8400027	Control - Root	12.496