Gene detail

Gene detail information of Glyur000987s00026420

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55190.1	7.00E-119	RAN GTPase 3
NR	XP_007154954.1	8.89E-155	hypothetical protein PHAVU_003G161100g [Phaseolus vulgaris]
COG	YP_007376943.1	5.00E-14	small GTP-binding protein domain-containing protein, Ras family [Nonlabens dokdonensis DSW-6]
Swissprot	tr\|P41919\|RANB1_TOBAC	1.00E-151	GTP-binding nuclear protein Ran-B1
trEMBL	tr\|V7CC71\|V7CC71_PHAVU	3.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW26948.1}

Sequence

Transcript Sequence

>Glyur000987s00026420.1
GTTCTTCATCCACAAACACTTTCAATAATGCAATGCAATGCAATGCTTTGTGGTGGCGTAAGATTGAAGCCAATAATAATACTTGTGCGTGATTTTCAAGTCCACACACAAACACCACCCACCCCTCCAATAGCAAACTTTATAAGGACCAACCTTCTCCATCCTCATTCCTCAAGCTTCACCTTAATTAACCACCCTCTCATTCATTCACACTCTCATACTATCATTCATGGCGCTCCCACAGCAACAGAAGGTCGACTCTCCAAGTTTCAAGCTAGTCATCGTAGGCGATGGAGGAACTGGAAAAACCACTTTCGTGAAGAGACACCTAACTGGGGAGTTTGAGAAGAAATATGAACCAACCATTGGTGTGGAGGTTCATCCACTAGATTTCAATACAAATTGTGGAAGAATTCGTTTTTATTGCTGGGANACTGCTGGCCAAGAAAAATTTGGTGGTCTTAGAGATGGTTATTATATTCATGGACAGTGTGCTATTATTATGTTTGATGTAACGGCTCGGTTGACATACAAGAATGTTCCTACATGGCACCGAGATCTCTGTCGGGTGTGTGAGAACATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTCAAGAATAGACAGGTTAAAGCAAAGCAGGTCACATTTCACAGGAAGAAGAATCTGCAGTACTATGAGATATCTGCAAAGAGTAACTACAATTTCGAGAAACCTTTCTTATACCTTGCCAAGAAACTTGCAGGGGATCCTGGCCTTCACTTTGTGGAGATGCCTGCTCTTGCTCCCCCAGATGTAGTCCTTGATCTAGCTACACAGCAATTGAATGAACAAGAGCTAATGATGGCGGCTGCTCAGCCTCTTCCCGATGACGATGATGAAACATTTGAGTGAACTTTTGGGCTTTCCAGAGTTTTCCTGATAATTTTCCCCCGTTTGTGATGAATTGTAATCTTGGGGGTTTCATAAAAAAGAAAGCACAAATTAAGTTAGTAATTTAGTTAGTGAAGGTAAGGGTCTCTATTAAGGGTCTCTATTTTAGCATAGGCATATGTTGTTTTTCTTTATTCCTGCAGTAATGCTATCTGTAATGGTAATTAAATTGACTTCTTGTGTCATTAAACTTTTGAGTGATGTAGCTCGTTAATTTTTCGCTCATGTGGGCGTGGATGAAATGGACCTATTCAATGATGTAATTATCTGTTTAGTGTTAATTGGATATTGATAATTAAATGAATCTGTGAATACCAACCTTTTTATAAGCCTATTAAGTGGAGTANCGGTGGATAATGGTTATAGAACTGCTAATAAAATCACAATTAGGTGGTAGGCCATTGATTTGAAAGAAAATTGCATGTTTGATTTGAGGAAAATGTAGTAAAGAGGAAAGAAAATTTTGAAATTTTCTGCTGTTTGGATGGGAAGGAGANGACCGTTATTTCTCCTCATGCACCACAAGGTTTGCAGTTCTAATTTGAAATATTCTTGCGTGTTTGATGCTTAGATGTTTCTGAGTTCATACTTTAGACTGCTTAGTATTTGGGTTACAAGTAAAAAAAAAATAAGAAAAAGGGATTTATCGTAATCGTAGGCTCGTAGCCAAACAGAGCAGCGAACAGTTTCTTATGTCTCACATGAAACCAACAGGCAACTATCCGTTGCAGTATGCAATTTAGAACATTCCTTTTGTAGGAATCANGATCATTCACTTGGCTTTGACCCAGCTGGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00987	87646	90752	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000987s00026420.1	PF00071.17	Ras	15	171	1.90E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.201
SRR1783600	control	2.171
SRR1783602	moderate drought stress	1.089
SRR1811619	moderate drought stress	1.072

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.535
DRR006520	Root Summer glycyrrhizin high producing strain	11.214
DRR006521	Root Winter glycyrrhizin high producing strain	36.501
DRR006522	Root Winter glycyrrhizin high producing strain	35.999
DRR006523	Root Summer glycyrrhizin low producing strain	41.298
DRR006524	Root Summer glycyrrhizin low producing strain	40.739
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.915
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.956

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.807
SRR2868004	Drought Stress (root)	23.258
SRR2967015	Control (root)	16.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.975
SRR9715740	Leaf	29.769
SRR9715741	Leaf	26.199
SRR9715739	Root	2.581
SRR9715742	Root	7.047
SRR9715743	Root	6.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.933
SRR8749028	MeJA induced 9h	63.381
SRR8749029	MeJA induced 9h	44.580
SRR8749030	Uninduced	82.961
SRR8749031	Uninduced	62.087
SRR8749032	Uninduced	82.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.819
SRR8400027	Control - Root	17.075