Gene detail

Gene detail information of Glyur000987s00026413

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26650.1	0	K+ transporter 1
NR	XP_003609240.1	0	Potassium channel [Medicago truncatula]
COG	YP_724331.1	6.00E-41	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q38998\|AKT1_ARATH	0	Potassium channel AKT1
trEMBL	tr\|G7JV81\|G7JV81_MEDTR	0	Inwardly rectifying potassium channel subunit {ECO:0000313\|EMBL:AES91437.1}

Sequence

Transcript Sequence

>Glyur000987s00026413.1
CGCTTCCACCAAAAAACTTAATTAACACATACCATAGATTCAGGACCGCCTCAACGATTCAACTTAAATAACATACACAAACATGCCGACTAAAACTAAAACCGTGTAGTGACTAGTAACAGACACATATATACATATATTTGTTGTATCAGTCACAGACTCACAAAAACAGAGAAACAAAAGAATGGTGATTCCCATGGCCATGTGCGGGCAAGAAGAGATTGAATTATCAAGGGATGGTAGCCAGTACAGTCTCTCNACCGGAATTTTACCATCTCTCGGTGCCAGAAGTAGCCGCAGAGTTAAGCTCAGNCCCCTCATTATATCTCCTTATGATCGCCGTTACAGAATATGGGAAACTTTCCTTGTTATTCTGGTAGTCTATACTGCTTGGGTATCTCCCTTTGAGTTCGGATTCCTTAAGAAACCAAAGTCACCGCTTTCTATTACTGATAATATTGTGAATGGGTTCTTCGCGGTGGATATAATTCTCACCTTTTTTGTGGCTTACATCGACAAAGCTACCTACTTGTTCGTGGATAACCCGAAACAGATTGCTTGGAAATATGCAAGAACTTGGTTGGCCTTTGATGTCATCTCTATCATTCCCTCAGAGCTTGTTGCGAAGCTATNTACTTCTTCTATCCAAGCTTATGGGCTATTCAACATGCTTCGGTTGTGGCGTCTTCGAAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTACCCTTTTTGCTGTGCATTGTGCTGCATGTTTTTATTATCTTCTTGCTGCACGTTATCATGATCCCAAAAGGACATGGATTGGGGAAACAATGGAAAACTTTCTTGAGCAGAGTTTGTGGACAAGATACGTGACATCTATTTACTGGTCTATCACTACCTTAACAACAGTTGGTTATGGAGATTTGCATCCCGTCAATGAAAGGGAGATGGTCTTTGANATCTTTTACATGCTCTTCAATCTAGGATTAACAGCATATCTGATTGGTAATATGACTAATTTGGTTGTACATGGCACAAGTCGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCAAGTTTTGCCCAGAGGAACCAATTGCCTACTCGTCTACAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGACTCAGAAGGATTGCAACAGCAAGAAACACTTGATTCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTCTATTCTCTGATGGATAAGATCTACTTGTTTCGTGGGGTTTCAAATGACTTGCTTTTTCAACTGGTTTCAGAGATGAAACCTGAGTATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCTACTGACTTTTATATTCTAGTAACTGGTGCCGTGGTTGTTGGAGAGGCAAAAACTGGAGATCTTTGTGGTGAGATTGGAGTGCTTTGCTATAAGCCACAACTTTTTACAGTTCGAACTAAGCGATTAAGCCAGCTACTGCGGCTGAACCGAACTACGTTCATGAATATTGTTCAGGCCAATGTTGGGGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTCAACGATCCAATCATGGATGGAGTTTTGGTGGAGACTGAGAACATGTTGGCTCGTGGCAGGATGGACCTACCTGTAAGTCTATGCTTTGCAGCAGTAAGAGGAGATGATTTGTTGTTACATCAATTGTTAAAACGAGGCCTGGATCCAAATGAATCCGACAACAATGGAAGGACAGCTTTGCATATAGCAGCATCAAATGGAAAAGAGAATTGTGTTATGCTTCTGTTAGATTATGGGGCGGATCCCAATATTAGAGATTCTGATGGAAATGTACCACTGTGGGAGGCTATACTAGGGGGGCATGAATCAGTGACGAAGCTATTAGTAGAAAATGGCGCTACCTTGCAATGCGGTGATGTGGGTCAGTTTGCATGCACTGCTGTTGAACAGAACAGTCTCAACTTGCTCAAGGACATCATGTGTCACGGAGGAGACATCACACTCCCAAACACCAACGTTGGGACCACAGCTTTGCATGTTGCAGTGTCTGAAGACAATGCTGAGATTGTGAAATTCCTTTTGGATCACGGGGCCAACATTGACAAACCAGACAAGTATGGTTGGACCCCAAGAGCTCTAGCAGATCAACAGGGACATGTAGAGATCAAAGCCATTTTTTATTCCAGTGGGGAACCCAAGTCTCAGTCTTTTGTTGCTATTCCTGAGAAGCAGCAGAGTAAGGTCAGGTACCTTGGCAGATTTACAAGTGAGCCAACAATGCCTTCATCCCAAGATGGATCCTTTCATGGAACAGATGGCTCTTGGATCCAAAGCCGTCCAAGGCGTAAGAGGAATAACTTCCATAACTCACTCTTTGGGATAATGTCAGCAGCACACAAGGGGGATAGTGACATGTTTTTCTCTGTTAACAATAACGATGCAAGGAATGGTGTGAAGAGTAGTAGGGTGTGCCCAACTAGAGTAACAATTAGTTGCCCNGAAAAGGGTGAGGTTGCTGGGAGGCTTGTGTTACTTCCTGGGAGCTTTAAAGAGTTAGTTGAGATTGGAGCTAAGAAATTTGGTATCCATCCTGCTAAGGTTGTCTGCAAAGATGGAGCTGAAATTGATGATATAGAGGTGATTAGAGATGGTGACCATCTTGTTTTTGTCAGTGATGGTGGGGTGTTAGAGTCCAATCGTCCAACACCCTTGAATGGTGTACTTCCATAATTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00987	49758	56573	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000987s00026413.1	PF00520.26	Ion_trans	88	280	4.00E-23
Glyur000987s00026413.1	PF00027.24	cNMP_binding	383	458	3.90E-06
Glyur000987s00026413.1	PF12796.2	Ank_2	503	592	1.80E-17
Glyur000987s00026413.1	PF12796.2	Ank_2	602	683	1.80E-13
Glyur000987s00026413.1	PF11834.3	DUF3354	782	846	7.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.339
SRR1783600	control	0.320
SRR1783602	moderate drought stress	0.433
SRR1811619	moderate drought stress	0.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.781
DRR006520	Root Summer glycyrrhizin high producing strain	0.869
DRR006521	Root Winter glycyrrhizin high producing strain	21.296
DRR006522	Root Winter glycyrrhizin high producing strain	20.746
DRR006523	Root Summer glycyrrhizin low producing strain	1.716
DRR006524	Root Summer glycyrrhizin low producing strain	1.692
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.851
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.433
SRR2868004	Drought Stress (root)	3.871
SRR2967015	Control (root)	5.971

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.235
SRR9715740	Leaf	1.249
SRR9715741	Leaf	3.076
SRR9715739	Root	0.157
SRR9715742	Root	1.884
SRR9715743	Root	1.925

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.392
SRR8749028	MeJA induced 9h	3.714
SRR8749029	MeJA induced 9h	3.916
SRR8749030	Uninduced	4.146
SRR8749031	Uninduced	1.802
SRR8749032	Uninduced	2.383

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.560
SRR8400027	Control - Root	6.333