Gene detail

Gene detail information of Glyur000987s00026411

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30380.1	8.00E-12	Barwin-related endoglucanase
NR	NP_001235774.1	3.28E-73	uncharacterized protein LOC100306489 precursor [Glycine max]
Swissprot	tr\|Q9ZP41\|EGC_CITJA	2.00E-15	EG45-like domain containing protein (Precursor)
trEMBL	tr\|C6SZM0\|C6SZM0_SOYBN	1.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G12760.1}

Sequence

Transcript Sequence

>Glyur000987s00026411.1
ATTTGAACCATATTTGGTCCAGATACATGTATTTTTTTAATATAATCCAGATGTATGTATTTATTTTTTAATTTAAGACCGGAAGAAGTAATTAATTAATTACTCCACAGCATCGCTGCGAATGCGATACTTATATATCATTGCAGTTAAATACAAGTCCAGTGCCATCTACAAGTGTCTAGAATCATCATGTCAGCAACACTTCACTCACCACCANCATCCTTCTTCATCATTTTCTTGTTTCTGCATCTCTCCTTCCCCTCCAACGCTGACGTGGGCACCGCAGCCAGTTACTCTCCACCGTATCTACCATCGGGATGTTACGGCAGCGATGCGACGGAGTTCCCGACGAGCAACCTGTTCGCGGCGGCGGGAGATGGGATATGGGACAACGGAGCGGCGTGTGGGAGGCAGTATCTGGTGAGGTGCATCAGTGCGGAGCAACCGAGGACTTGCATTCCGGAGCAGAGCATTCAGATCAAGATTGTCGATTACGCCTCCACTGCGGTGTCGCCGCCCTCCGCCGCCGGCACCGCCATGGTTTTATCNGACAAGGCTTTCGCCACTATTGCCAACGCTTCTGCCTCCTTGATCAACATTGAATTTCAACAGGTTTGATNTGTATATATAATAACTTACTTGTTACATATTCTGGTTAATCGGTTGGTGTTGTATTTGGGAACTGCTTTAAGGATGAAGTTGAGCAATTGGTGTCAGCTATAAACTTGAAGATTGTCATAAAAAAACTCTTTATCAAGAGAGAACAAGAATATTCATCCCGAAGGGGTATTTTCAAATTTGATCGGTGGACAATTTGTTTTAGGATGGAATTTAATTATTACTATTACTGTATTAGTATTATTATTTTTATTATTATTGACAAAGCATATATATATATATATGTGTGTGTGTGTGTGTGTGTGCGCAAATTCGCTGGTCTTGTTATTGATCAACAAAAATTCCCCGGTCTTGCTTTTATTTTATGTCGGAAATTTCTGACAGCCTGAGATATTTTGGCTGTTTATAATTGAATCAAGGAGTGTATTCCGGGATGAGCTACGAGGGAAATTTCCTCGTCACTTTCTGGCTTTGAATGCGTCTTTGGCTGTATTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00987	40324	41705	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000987s00026411.1	PF03330.13	DPBB_1	61	139	4.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.342
SRR1783600	control	1.314
SRR1783602	moderate drought stress	2.350
SRR1811619	moderate drought stress	2.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.537
DRR006520	Root Summer glycyrrhizin high producing strain	0.545
DRR006521	Root Winter glycyrrhizin high producing strain	0.499
DRR006522	Root Winter glycyrrhizin high producing strain	0.487
DRR006523	Root Summer glycyrrhizin low producing strain	1.681
DRR006524	Root Summer glycyrrhizin low producing strain	1.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.102
SRR2868004	Drought Stress (root)	2.408
SRR2967015	Control (root)	2.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.814
SRR9715740	Leaf	37.714
SRR9715741	Leaf	46.198
SRR9715739	Root	5.864
SRR9715742	Root	3.738
SRR9715743	Root	3.823

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.161
SRR8749028	MeJA induced 9h	5.107
SRR8749029	MeJA induced 9h	3.644
SRR8749030	Uninduced	1.617
SRR8749031	Uninduced	1.547
SRR8749032	Uninduced	0.919

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.079
SRR8400027	Control - Root	0.830