Gene detail

Gene detail information of Glyur000987s00026408.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26640.1	0	3-ketoacyl-CoA synthase 11
NR	XP_003524525.1	0	PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max]
COG	NP_285649.1	6.00E-18	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|O48780\|KCS11_ARATH	0	3-ketoacyl-CoA synthase 11
trEMBL	tr\|I1K1C8\|I1K1C8_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000987s00026408.1
CTGCTACAATTATTCCTCCTTGCATTGCTTGCCTGTTCTCCTTTTCTCCATACTCAACATCTCTCTTCTCCGGCGACATTCCTGGGACGGGAATCTCCGGCGTGTCTGGTCTTCAAGGGAAAAATGACAGATGCAAGACCAGATACACCCTTGATNCCACCATCGCGGAACCTCCCCGATTTCAAGAAATCTGTTAAATTGAAGTATGTCAAGCTTGGTTATCACTACCTCATCACTCATGGAATGTANCTCTTTCTTTCCCCCCTTGTGATGCTTATTGCTGCCCAGCTCTCCACCTTCTCCATCCAAGACTTTTATGATCTCTGGGAGCATCTACAATACAACTTGATATCTGTCATTCTTTGCTCAACTCTCCTTGTTTTCCTGTCCACCCTCTACTTTCTGACTCGTCCTAGGCCGGTATACCTTGTCAACTTCTCCTGTTACAAGCCTGAAGAATCTCGGAAATGCACAAAAAGGATCTTCATGGATCAGTCCCGGATGACTGGTTCTTTCACAGAGGAAAATCTTGAATTCCAGCGAAAGATCCTCGAGAGATCTGGCCTCGGGGACTCCACTTACCTCCCGGAGGCTGTCCTCAACATTCCTCCCAACCCTTCAATGAAAGAAGCTAGAAAAGAAGCCGAGATCGTGATGTTTGGTGCCATTGATGAGCTATTTGCTAAGACCTCTGTGAAGCCTAAGGATATTGGGATTCTGATTGTAAATTGTAGCCTGTTCAACCCAACTCCATCGCTCTCTGCAATGATTGTCAATCATTACAGGCTTCGAGGGAATATAAAAAGCTACAACTTAGGTGGGATGGGTTGCAGTGCTGGGCTGATCTCAATTGACCTTGCTAAAGATCTTCTCCAGGTCAATCCCAACTCCTATGCATTGGTCATTAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGGTCAAAGCTTGTTTCTAATTGTTTGTTTCGAATGGGAGGAGCTGCAGTTCTGCTTTCCAACAAAAGCTCCGACAGAAGAAGATCCAAATACCGATTGGTCACCACTGTACGCACTAATAAGGCTGCNGATGACAAGTGCTTTAGCTGTGTTACCCAAGAAGAAGATGCCAATGGCAAGATTGGTGTTACCTTGTCAAAAGATCTGATGGCAGTTGCAGGTGATGCTTTAAAAACCAATATCACTACCCTGGGGCCTCTTGTACTTCCAACATCTGAGCAGCTGCTATTCTTNGCCACATTGGTCGGGAAGAAGCTTTTCAAGATGAAGATTAAACCTTATATTCCAGATTTCAAGCTTGCTTTTGAACATTTTTGCATCCATGCTGGAGGCAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCACCTATCTCCTTGGCATATGGAGCCATCAAGGATGACGCTCTATCGTTTTGGAAACACCTCTAGCAGTTCGCTTTGGTACGAACTGGCTTACACAGAAGCCAAAGGGAGGATCAAGAAGGGAGATAGGACATGGCAAATAGCATTTGGTTCCGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCAACCCTGATAAGGAGAAAAGCCCTTGGATAGATGAGACTGACCAGTTTCCGGTTGATGTTCCAAGGTGTGTTGATGCTAAAAGCTCTGACTTGCGTGCTTGTTGCAATCCCAACTTGAGGGAACCTGCTTCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00987	30524	33543	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000987s00026408.1	PF08392.7	FAE1_CUT1_RppA	133	422	6.20E-145
Glyur000987s00026408.1	PF08541.5	ACP_syn_III_C	439	519	4.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.619
SRR1783600	control	35.805
SRR1783602	moderate drought stress	22.328
SRR1811619	moderate drought stress	22.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.184
DRR006520	Root Summer glycyrrhizin high producing strain	27.513
DRR006521	Root Winter glycyrrhizin high producing strain	2.600
DRR006522	Root Winter glycyrrhizin high producing strain	2.512
DRR006523	Root Summer glycyrrhizin low producing strain	20.009
DRR006524	Root Summer glycyrrhizin low producing strain	20.893
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.858

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.240
SRR2868004	Drought Stress (root)	31.959
SRR2967015	Control (root)	27.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.639
SRR9715740	Leaf	24.981
SRR9715741	Leaf	24.224
SRR9715739	Root	41.596
SRR9715742	Root	60.584
SRR9715743	Root	56.762

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.528
SRR8749028	MeJA induced 9h	10.714
SRR8749029	MeJA induced 9h	10.199
SRR8749030	Uninduced	4.623
SRR8749031	Uninduced	1.517
SRR8749032	Uninduced	2.607

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.770
SRR8400027	Control - Root	25.311