Gene detail

Gene detail information of Glyur000986s00028876.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G29630.3	thiaminC
NR	XP_004500235.1	PREDICTED: phosphomethylpyrimidine synthase, chloroplastic-like [Cicer arietinum]
COG	YP_003135247.1	thiamine biosynthesis protein ThiC [Saccharomonospora viridis DSM 43017]
Swissprot	tr\|O82392\|THIC_ARATH	Phosphomethylpyrimidine synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072UWI1\|A0A072UWI1_MEDTR	Thiamine biosynthesis protein ThiC {ECO:0000313\|EMBL:KEH34199.1}

Sequence

Transcript Sequence

>Glyur000986s00028876.1
TTGGCATATGGTGCTAACTTGGTAAATACTAAGAGATTCTCGTAGTTTCCCCTTTAATTTAATTTTTTTAGATCCTTCCCCTTTAATTCAATGTCATATTCAATTTAATTTATTTTTTGATGGCCACTGGAATACGTCCAAACGGCAATGAAAAAGGAAGTTTGCAGTGAAAATATCTAAGCCCGGAAAGAATCACGAGAAAGAACCACGTCGTGTGTGGGACTCTATATAAACACAACACACACCAACGTTAGTGAAGAACCGTTCACCCTCAATCTGCGTTATTTCATTGCAGATAAGACCATCCCTTTTGCTTCAGTTCTGCATCAAGATGGCGTCCGTGCATGCTAATGTGACATCAGCTGTTTGCAAGAATGGCAACCATGCTTCTCAATCAAAATTCCCAAATTCTACATTCTTGCCTCGGTTTGATGTTGTTGGGCGAGCTTCAAGTGCTTGGAAGAAGGAACTAGCTCCATTTTCCATGGCCTTGGTACCTAGAGCCACATTAACATTTGATCCTCCATCCACTAATGCAGACAAAACCAAACAAAAGAAGCACACAGTTGACCCTGCTTCTCCTGATTTTCTTCCTCTTCCTTCCTTTGAACAGTGCTTTCCAAAGAGCACTAAAGAATACAGGGAAGTCATTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCATTTCGACGAGTTCACCTGGCTGGGGATGAATCGCACTTTGATAACTATGACACCAGTGGTCCCCAAAATATAAGCCCAAGGATAGGACTACCAAAATTGCGCCAAGAGTGGGTTGATAGGAGACAGAAAATGGGTCCTCCAAGATTCACTCAGATGTACTACGCTAAGCAGGGAATCATTACTGAGGAGATGCTTTTTTGTGCTGCTCGTGAGAAGCTTGACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGAGCTATCATCCCTTCCAACAAGAAGCACTTGGAGTTAGAGCCCATGATAGTTGGAAGAAACTTTTTGGTGAAAGTAAATGCCAACATTGGAAATTCTGCTGTTGCAAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAGTGGGCAACTATGTGGGGAGCTGATACAGTCATGGATCTCTCAACCGGTCGCCACATCCATGAAACTCGAGAGTGGATCTTACGCAACTCTGCTGTACCAGTTGGGACTGTACCTATTTATCAAGCACTTGAGAAAGTTAATGGAATTGCTGAAGATCTTAGCTGGGAGGTTTTGAGGGATACCCTGATTGAACAAGCTGAACAGGGTGTAGATTACTTCACCATCCATGCAGGAGTACTTCTGAGATATATTCCTCTAACAGCCAAGCGCATGACAGGAATAGTCTCCAGAGGAGGATCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTTGCTTATGAGCACTGGGATGACATACTTGACATCTGCAATCAGTATGATGTGGCCCTATCCATTGGTGATGGGTTGAGACCTGGATCCATTTATGACGCAAATGACACAGCTCAATTTGCTGAGCTCTTGACACAAGGCGAACTGACCCGTAGAGCATGGGAAAAGGATGTACAGGTTATGAATGAAGGACCTGGACATGTTCCAATGCACAAGATTCCTGAAAACATGCAGAAGCAGCTAGAATGGTGTAATGAAGCACCTTTCTACACCCTTGGTCCTTTAACAACTGATATTGCCCCTGGTTATGATCACATCACCTCTGCTATTGGTGCTGCAAATATTGGGGCACTTGGTACTGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTTGGGTTGCCAAATCGAGATGATGTGAAGGCTGGAGTTATAGCTTACAAGATAGCTGCTCATGCTGCTGATTTGGCCAAAGGGCATCCACATGCTCAAGCCTGGGACGATGCATTAAGCAAGGCAAGATTCGAATTTCGGTGGATGGACCAGTTTGCTTTGTCCTTGGATCCAATGACAGCCATGTCCTTCCATGATGAAACATTGCCATCTGAAGGTGCAAAGGTGGCCCATTTCTGCTCAATGTGTGGCCCTAAATTCTGCTCTATGAAGATAACAGAGGATGTGAGAAAGTATGCTGAGAAACATGGCTATGGGGATGCCGAGGAAGCTCTGAAGCATGGGATGGATGCTATGAGTGCAGAATTTCTAGCTGCGAAGAAAACTGTCAGTGGAGAACAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCGGAATCTTACTTAAGTTCCAAGGAGAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00986	51161	55730	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03147	thiC	EC:4.1.99.17	Thiamine metabolism	map00730

Gene Ontology

biological_process
GO:0009228 thiamine biosynthetic process

molecular_function
GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000986s00028876.1	PF13667.1	ThiC-associated	96	161	2.90E-07
Glyur000986s00028876.1	PF01964.13	ThiC	168	590	7.20E-197

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.289
SRR1783600	control	52.461
SRR1783602	moderate drought stress	77.479
SRR1811619	moderate drought stress	77.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	200.751
DRR006520	Root Summer glycyrrhizin high producing strain	197.239
DRR006521	Root Winter glycyrrhizin high producing strain	111.726
DRR006522	Root Winter glycyrrhizin high producing strain	108.778
DRR006523	Root Summer glycyrrhizin low producing strain	157.170
DRR006524	Root Summer glycyrrhizin low producing strain	156.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	330.845
DRR006526	Leaf Summer glycyrrhizin high producing strain	328.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.085
SRR2868004	Drought Stress (root)	6.325
SRR2967015	Control (root)	37.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.578
SRR9715740	Leaf	23.955
SRR9715741	Leaf	13.388
SRR9715739	Root	16.060
SRR9715742	Root	29.307
SRR9715743	Root	27.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.993
SRR8749028	MeJA induced 9h	14.840
SRR8749029	MeJA induced 9h	5.963
SRR8749030	Uninduced	7.590
SRR8749031	Uninduced	2.328
SRR8749032	Uninduced	3.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.121
SRR8400027	Control - Root	73.040