Gene detail

Gene detail information of Glyur000986s00028872

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58860.1	0	cytochrome P450, family 86, subfamily A, polypeptide 1
NR	XP_004500237.1	0	PREDICTED: cytochrome P450 86A1-like [Cicer arietinum]
COG	YP_004862454.1	1.00E-36	Cytochrome P450 [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|P48422\|C86A1_ARATH	0	Cytochrome P450 86A1
trEMBL	tr\|A0A072UWJ2\|A0A072UWJ2_MEDTR	0	Cytochrome P450 family-dependent fatty acid hydroxylase {ECO:0000313\|EMBL:KEH34209.1}

Sequence

Transcript Sequence

>Glyur000986s00028872.1
ATGATGATGATGCAAACGGAGGATACACTCCCTCTATTCTTCACCCTGGCAGCTGCACTCTCCGCATACCTGCTCTGGTTCCACCTGCTGGCCCGAACCCTAACCGGTCCAAGAGTCTTCCCATTCGTGGGCAGCCTCCCGGTTCTCTTCATGAACCGAAACCGGGTCCACGACTGGATCACCTCAAACCTCCGGCAGAGCCAGACCACAGGCGGTTCAGCAACCTACCAAACCTGCACACTCCCCTTCCCATTCCTAGCACACAAGCAAGGCTTCTACACCGTCACAAGCCACCCAAAAAACATCGAGCACATCCTCCGAACCCGGTTCGACAACTACCCAAAAGGTCCCACGTGGCAAACCGCCTTCCACGACCTCCTCGGACACGGAATCTTCAACAGCGACGGTGACACGTGGCTCGTCCAGCGCAAAACCGCAGCACTCGANTTCACCACACGCACCCTTCGTCAAGCCATGGCTCGATGGGTCAACCGAACCATCAAGAACCGGTTATGGTGCATTCTCGACAAAGCCGCAAANGAAAAAATCTCAATCGATTTGCAAGACCTTCTCCTTCGATTAACGTTCGATAACATTTGCGGACTCACTTTCGGTAAGGACCCGGAAACTCTCTCTCCGGATCTACCCGATAACCCGTTTTCCGTTTCATTCGATACCGCTACGGAAGCCACTATGCAGAGGCTTCTCTACCCTGGCTTTATTTGGAGGTTCCAGAAGCTTCTATGCGTTGGTTCCGAGAAGAAATTGAAGGAGAGTTTGAGTGCTGTGGAAGCTTACATGAACGACGCCGTTTCGGCTCGCGAGGAATCCCCTTCCGATGACTTGTTATCGCGGTTCATCAAGAAGCGCGACCGCGACGGCGATGGGAAGCCTTTTGACGCCGGAAAACTGAGGCATGTTGCTCTNAACTTCGTCCTCGCCGGGAGGGACACGTCATCGGTGGCGCTGAGTTGGTTNTTCTGGCTCGTCATGAACCACCCCCGCGTCGAGGAGAGGATCATAAGCGAGTTGACGGCGGTTCTGGCGGAGACGCGCGGCGGAGATCGGCGGAGGTGGACGGAGGAGGCGGTGGACTTCGAGGAGGCGGAGAGGCTGGTCTATCTGAAGGCCGCGTTGGCTGAGACGCTGCGTTTGTACCCGTCGGTGCCGGAGGATTTTAAATATGCTGTCTCCGATGATGTTTTGCCGGATGGGACGGTGGTTCCGGCGGGTTCGACGGTGACGTATTCGATATACTCGGTGGGGAGGATGAAGAGCGTGTGGGGTGAGGACTGCNTGGAGTTTAGACCGGAAAGGTGGTTATCGGTTGAGGGAGACCGGTTCGAACCGGTCAAAGATCCGTACAAGTTTGTGGCGTTTAATGCTGGACCGAGGACCTGCTTGGGGAAGGACTTGGCTTACCTTCAGATGAAGTCTGTGGCTGCGGCTGTGCTGATTCGTTACCGGCTTTCTCCGGTTCCCGGTCACCGGGTGNAGCAGAAGATGTCCCTCACGCTCTTCATGAAGCATGGCCTACGTGTGTTCCTGCATCCACATCGGTGCCAAGTTCTGGGAAGTGGTGTGTGTGGAGCATGGGATCGACCCCACCGGAAGGCGCTGAACGGTGCCGGCAACAATTGGGCCAAAGGACACTACATTGAAGGCGTTGAACTCATCGATTCTGTTCTAGATGTTGTTCGCAAAGAAGCTGAGAACTGCGATTGGTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00986	39791	42346	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP86A1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15401	CYP86A1	EC:1.14.-.-	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003924 GTPase activity

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000986s00028872.1	PF00067.17	p450	94	509	1.40E-63
Glyur000986s00028872.1	PF00091.20	Tubulin	540	574	2.70E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.151
SRR1783600	control	18.614
SRR1783602	moderate drought stress	14.128
SRR1811619	moderate drought stress	14.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.445
DRR006520	Root Summer glycyrrhizin high producing strain	0.435
DRR006521	Root Winter glycyrrhizin high producing strain	0.409
DRR006522	Root Winter glycyrrhizin high producing strain	0.377
DRR006523	Root Summer glycyrrhizin low producing strain	0.335
DRR006524	Root Summer glycyrrhizin low producing strain	0.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.274

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.760
SRR2868004	Drought Stress (root)	45.527
SRR2967015	Control (root)	36.989

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.484
SRR9715740	Leaf	0.534
SRR9715741	Leaf	1.046
SRR9715739	Root	75.826
SRR9715742	Root	23.300
SRR9715743	Root	32.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.134
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.110
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.079
SRR8400027	Control - Root	98.404