Gene detail

Gene detail information of Glyur000983s00021697

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02340.1	3.00E-43	alpha/beta-Hydrolases superfamily protein
NR	KEH31111.1	1.15E-163	epoxide hydrolase-like protein [Medicago truncatula]
COG	YP_629896.1	2.00E-44	epoxide hydrolase [Myxococcus xanthus DK 1622]
trEMBL	tr\|A0A072UNZ9\|A0A072UNZ9_MEDTR	4.00E-164	Epoxide hydrolase-like protein {ECO:0000313\|EMBL:KEH31111.1}

Sequence

Transcript Sequence

>Glyur000983s00021697.1
GGAGTAGGTAAATTTGTGGCAAATCCCCAATGCTACTATGAGTATGAGCTGCCCGGACATAACATAACAGTAAACAGTGTTCAGTTCCAGACACACAAGAGTCAGTGAGACGCATTCATGGATGAAATCCAACACAAGTTCGTCAACGTGGGAGCTCTAAAGCTCCACATAGCAGAAATTGGAAGCGGTCCAAACGTCGTCGTGTTTCTGCACGGCTTCCCGGAGATATGGTACTCCTGGCGCCACCAGATGATAGCCCTCGCCCATGCCGGATTCAGAGCCATTGCACCCGATTACAGAGGCTACGGACTTTCCGACCCGCCACCCGAACCCGAAAAGGCTACCTACTCCGATCTTCTCTCCGACCTCCTTGCAATTCTTGATGCTCTCGCTCTTTCCAAGGTGTTTCTTGTTGGAAAAGATTTTGGAAGTCGTCCTGCATATCTATTTTCCATTCTACACCCGGAAAGGGTCTTGGGAGTTGTCACATTGGGGGTTCCATATGTTCCACCAGGCCCCTCTATGTATCACAAATACCTCCCTGAAGGCTTCTACATTTTGAGATGGCGGGAACCAGGAAGGGCAGAGGCTGATTTTGGACGCTTTGATGCAAAGACTGTTGAGATCATGGATTTGGTGGAACCAGATACTCCTCTTCCCTCTTGGTTCACAGAAGAGGATCTTGCAACATATGGAGCTTTGTATGAGAAATCCGGATTCCGAACTGCACTGCAGTTCGTCAACGTGGGAGCTCTAAAGCTCCACATAGCAGAAATTGGAAGCGACTTTAACTTACCAGATCGTGTAGTCAAGGTTCCAGTACTCCTGATAATGGGTGGCAAGGATTATAGTTTAAAGTTTCCAGGGATGGAGGATTTAACAAAGGGTGAAAAGGCCAGAGAGCTTGTTCCCAATCTGGAGGTCACGTTTATTCCTGAGGGAACCCATTTTGTTCAAGAACAATTTCCCGTGGACACTGTTACTTTGTCCCCTTCACTGCACTCAATTTCTGTTGTTAGTTGTCCAAACGTCGTCGTGTTTCTGCACGGCTTCCCGGAGATATGGTACTCCTGGCGCCACCAGATGATCGCCCTCGCCCATGCCGGATTCAGAGCCATCGCCCCCGATTACAGAGGCTATGGACTTTCCGACCCGCCGCCCGAACCCGAAAAGGCTACCCTCTCCGATCTTCTCTCCGACCTCCTTGCAATTCTTGATGCTCTCGCTCTTTCCAAGCTTGTTGAAGTGTCTTTCAGTTCTTCTCAAGGGAAACTAGTCTTTGTACCTGCTGGAACTTCAGATTTCACACTTGTGTTCCTTGTTGGGAAAGATTTTGGAGGTCCTCCTGCATATCTATTTTCCATCCTACACCCGGAAAGGGTCCTGGGAGTTGTCTCATTAGGGGTTCCATATGTTCCACCAGGCCCCTTCATGTTACATAACTACCTACCTGAAGGCTTCTACATTATGAGATGGCAGGAACCAGGAAGGGCAGAGGCTGACTTTGGACGCTTTGACGCAAAGACTGTTGTCCGAAAAATTTACATCCTTTTTTCAGGAACTGAATTACCAATAGCTCATGAAAACCAGGAGATCTTGGATTTGGTGGAACCAGATACTCCTCTCCCCTCTTGGTTCACAGAGGAGGATCTTGCAACATACGGAGCTTTGTATGAGAAATCTGGATTCCGAACTGCACTGCAGGTTCCATATAGGATACTTGGTGATGAAGACTTTAACTTACCAGATCGTGTAGTCAAGGTTCCAGTACTCCTGATAATGGGTGGCAAGGATTATAGTTTAAAGTTTCCAGGGATGGAGGATTTAACAAAGGGTGAAAAGGCCAGAGAGCTTGTTCCCAATCTGGAGGTCACGTTTATTCCTGAGGGAACCCATTTTGTTCAAGAACAATTTCCTGCACAGACCTCTGGGGTGACGTTTTTGCCTAAAATTCGCTTAAGTCAATCTGGCTCGCTTAAGCGAATTTGCCTGGGTAGTGCTAAGCGAGCAGCTCGAAACAGAAACAATTATAAGTTCGTTTTGAAGCCAGTTTCGCGAGGAGTTGGCTACACTGGCCGAACCATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00983	89213	95404	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000983s00021697.1	PF12697.2	Abhydrolase_6	28	286	1.80E-32
Glyur000983s00021697.1	PF12697.2	Abhydrolase_6	306	603	2.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.290
SRR1783600	control	3.380
SRR1783602	moderate drought stress	4.986
SRR1811619	moderate drought stress	4.801

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.894
DRR006520	Root Summer glycyrrhizin high producing strain	2.387
DRR006521	Root Winter glycyrrhizin high producing strain	3.144
DRR006522	Root Winter glycyrrhizin high producing strain	3.435
DRR006523	Root Summer glycyrrhizin low producing strain	3.186
DRR006524	Root Summer glycyrrhizin low producing strain	3.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.723
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.427

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.772
SRR2868004	Drought Stress (root)	3.689
SRR2967015	Control (root)	3.941

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.550
SRR9715740	Leaf	32.713
SRR9715741	Leaf	28.467
SRR9715739	Root	1.469
SRR9715742	Root	1.972
SRR9715743	Root	3.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.351
SRR8749028	MeJA induced 9h	2.142
SRR8749029	MeJA induced 9h	1.051
SRR8749030	Uninduced	2.256
SRR8749031	Uninduced	0.633
SRR8749032	Uninduced	0.992

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.039
SRR8400027	Control - Root	2.882