Gene detail information of Glyur000983s00021690 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21660.1 | 0 | proline-rich spliceosome-associated (PSP) family protein |
| NR | XP_003541544.1 | 0 | PREDICTED: splicing factor 3B subunit 2-like isoform X1 [Glycine max] |
| trEMBL | tr|I1M0D7|I1M0D7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G25110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00983 | 58554 | 66010 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000983s00021690.1 | PF04037.8 | DUF382 | 166 | 293 | 7.20E-59 |
| Glyur000983s00021690.1 | PF04046.11 | PSP | 301 | 348 | 4.10E-23 |
| Glyur000983s00021690.2 | PF04037.8 | DUF382 | 166 | 293 | 6.30E-59 |
| Glyur000983s00021690.2 | PF04046.11 | PSP | 301 | 348 | 3.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.357 |
| SRR1783600 | control | 46.307 |
| SRR1783602 | moderate drought stress | 71.109 |
| SRR1811619 | moderate drought stress | 70.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.285 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.050 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 99.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 96.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.496 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.377 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.862 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.057 |
| SRR2868004 | Drought Stress (root) | 67.337 |
| SRR2967015 | Control (root) | 73.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.043 |
| SRR9715740 | Leaf | 35.578 |
| SRR9715741 | Leaf | 45.953 |
| SRR9715739 | Root | 2.753 |
| SRR9715742 | Root | 26.395 |
| SRR9715743 | Root | 22.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 144.129 |
| SRR8749028 | MeJA induced 9h | 130.037 |
| SRR8749029 | MeJA induced 9h | 129.138 |
| SRR8749030 | Uninduced | 154.492 |
| SRR8749031 | Uninduced | 130.244 |
| SRR8749032 | Uninduced | 113.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.310 |
| SRR8400027 | Control - Root | 64.181 |