Gene detail information of Glyur000983s00021689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28310.2 | 3.00E-25 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007159297.1 | 7.55E-123 | hypothetical protein PHAVU_002G226100g [Phaseolus vulgaris] |
| Swissprot | tr|O24463|PBF_MAIZE | 4.00E-29 | Dof zinc finger protein PBF |
| trEMBL | tr|V7CQU0|V7CQU0_PHAVU | 3.00E-123 | Uncharacterized protein {ECO:0000313|EMBL:ESW31291.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00983 | 51631 | 52509 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000983s00021689.1 | PF02701.10 | zf-Dof | 50 | 108 | 1.70E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.180 |
| SRR1783600 | control | 21.476 |
| SRR1783602 | moderate drought stress | 23.722 |
| SRR1811619 | moderate drought stress | 22.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.267 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.759 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.469 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.970 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.902 |
| SRR2868004 | Drought Stress (root) | 42.477 |
| SRR2967015 | Control (root) | 17.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.576 |
| SRR9715740 | Leaf | 10.754 |
| SRR9715741 | Leaf | 12.811 |
| SRR9715739 | Root | 9.832 |
| SRR9715742 | Root | 31.507 |
| SRR9715743 | Root | 24.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.591 |
| SRR8749028 | MeJA induced 9h | 31.526 |
| SRR8749029 | MeJA induced 9h | 19.452 |
| SRR8749030 | Uninduced | 46.709 |
| SRR8749031 | Uninduced | 46.017 |
| SRR8749032 | Uninduced | 18.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.547 |
| SRR8400027 | Control - Root | 19.034 |