Gene detail

Gene detail information of Glyur000983s00021688

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61065.1	2.00E-61	Protein of unknown function (DUF1218)
NR	XP_007159296.1	7.41E-115	hypothetical protein PHAVU_002G226000g [Phaseolus vulgaris]
trEMBL	tr\|V7CPW9\|V7CPW9_PHAVU	3.00E-115	Uncharacterized protein {ECO:0000313\|EMBL:ESW31290.1}

Sequence

Transcript Sequence

>Glyur000983s00021688.1
AGCCAATGCACCACGCACGCAGTTGCTGCAAGTTAGCGCGTGTCGTAGCCAGTCACCGGTGCACAGTGCACTCGCTCGCGTNGCTTCACACATAGTGCGGGCCGGACAGACAGCGCAAACCCCACTTTACCCACAAGTAGAACTGTAGACGCACCAATACTAAACCCCACTTTTGGAAATTATCTTTTGAATTATTACTTAAATTAATTAATAACTTTAAGACGTGACTGAATAATAAAAAATGNTAAATAAATAAAATATGTAAGGCACATGATTCTTTGAATTAAAAACACAAGAAAACTTGCAAACGCAGGCATGAGTTACATTACATACTTTCAGGAGCTTTTTGGCAGTATTGCCCTCCCCTACGTTTCAGTTGCTGGTTCCGCTGTTTTTCTTTTCTTTCTCTGCTTATTATTCGTTTCTTTGTTTTGTTCGGTTTTTTATTCGTTGCACTTGCTTGGAATTTGTTTGGACCAGCCAGATTTAAGTTGTGGGTTTTAAGGTATGGCTTCGTCTCTGTTACTGGCGGTGGTGTTTGTGTTTGATCTGATTGCTTTTGGTCTCGCTGTTGCTGCAGAGCAGAGGAGGAATACTGCCACGTTAGGCACAAATAATGAAGGTAGAAAGTACTGCCTATATGATTCTGACATTGCAACCGCCCTAGGTGTGGGGTCCCTCTTTATCCTGGTTGCCAGTCAAGTGATCATCATGGTTGTCACTAGATGCCTCTGCTGTGGGAAAGCCATGAGACCCAGCGGATCCAGATCATGGGCAATTTGCTTGTTCATCACTAGCTGGGTGACATTTATTATTGCTGCTTCTTGCCTTCTAGCGGGTTCTGTGAGGAATGCTTACCACACCAAGTATCGTGATATCATGGGGGAGAGTGCCCCTTCATGTGAAACCTTGAGGAAGGGAGTCTTTGCAGCTGGGGCTGCTTTCATTGTTTTAACAGGCATAGTCTCGGAGCTTTATTATGTTAGTTTTTCAAAAGCTAATAGTGGCGGTCCCCCTCCCTATGCCAGGGACAGTGGTGTGAGGATGAGCAATTTATAGTGTAACTATCCCACTTGGGAATTTTGGAGTGGGGGGAGATGTCTGTATTGACTTGGCTTCCATGGATGTGAGAGCCTACTTGTAAGAGCTCTTATNCGTGGACCACCACACACCCGCACAACACCCGAGGACAATGAAGAAAATGGGAATTGGGGGTGTGTGGTGGGTGTATTATGGNGTCTGTGTAACATTTTGCTACTTGTAATTATGGAGCTCGGTTGAAAAATACTCTGTTTAGAGCTTAGACTCTGTTTAGACTTAGTTTCTTCTGACTCTTTNATCATCATGTCACAATAGGTAGTAGTANTTCCCCCTTGGACTCATGCTTTACATATAACCCCACATATTAATAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00983	43804	48113	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000983s00021688.1	PF06749.7	DUF1218	57	152	7.80E-31
Glyur000983s00021688.2	PF06749.7	DUF1218	114	209	1.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.529
SRR1783600	control	15.490
SRR1783602	moderate drought stress	16.140
SRR1811619	moderate drought stress	16.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.740
DRR006520	Root Summer glycyrrhizin high producing strain	21.411
DRR006521	Root Winter glycyrrhizin high producing strain	34.045
DRR006522	Root Winter glycyrrhizin high producing strain	33.441
DRR006523	Root Summer glycyrrhizin low producing strain	19.009
DRR006524	Root Summer glycyrrhizin low producing strain	18.797
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.789
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.610

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.842
SRR2868004	Drought Stress (root)	33.741
SRR2967015	Control (root)	33.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.271
SRR9715740	Leaf	14.963
SRR9715741	Leaf	14.179
SRR9715739	Root	30.015
SRR9715742	Root	27.815
SRR9715743	Root	28.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.649
SRR8749028	MeJA induced 9h	37.758
SRR8749029	MeJA induced 9h	78.158
SRR8749030	Uninduced	17.081
SRR8749031	Uninduced	13.277
SRR8749032	Uninduced	36.741

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.151
SRR8400027	Control - Root	30.495