Gene detail

Gene detail information of Glyur000982s00031396

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63380.1	3.00E-106	AMP-dependent synthetase and ligase family protein
NR	XP_004515681.1	0	PREDICTED: 4-coumarate--CoA ligase-like 9-like [Cicer arietinum]
COG	YP_006364271.1	6.00E-59	long-chain-fatty-acid--CoA ligase [Modestobacter marinus]
Swissprot	tr\|Q84P23\|4CLL9_ARATH	2.00E-126	4-coumarate--CoA ligase-like 9
trEMBL	tr\|A0A072VLZ4\|A0A072VLZ4_MEDTR	0	4-coumarate:CoA ligase-like protein {ECO:0000313\|EMBL:KEH42651.1}

Sequence

Transcript Sequence

>Glyur000982s00031396.1
CACGAATAGGCATAGCGACTCTCCAGTCTCCACACTTCATTCTCACACTTAATTAATTCCCATGGAAAACAAGACCAGTACTAGCCGNAACTCCTCCAACCCAGTGGTGGATCCAAAGAGCGGTTTCAACCCCGCTTCCAGAACNTTCCACAGTTTAAGACCCCCACTCAACCTTCCCCCGCCTAACGCCACCATCTCCGCCGCGTCCTACACCCTCTCCCTCCGCCGCAACTCGNCCTGGTCCGACTCAGTTCCCGCCCTCATCGACTCGGCCACGCTTCACAAAATCTCCTACTCCGAATTCATCCACCGCTCACACACCCTCGCCAGTAACCTNACCACCCTCCGCGGACTCACCAAAGGCCACACCGCATTTGTTCTCTCCCCAAACCTCATTCAGGTCCCGATCCTCTACTTCGCACTACTCTCCATTGGCGNGGTCCTCTCCCCCGCAAACCCAACCTCAACCCCCTCCGAGATTTCCCACCTCCTCACACTCTCAAAACCGGTCATTGCCTTTGCGACGTCGTTTTCCGCTCACAAGCTCCCTCATCTCCGACTCGGAACGATCCTCATCGACTCGGCCGAGTTCGACTCGCTCATGAATATTGCCACTACTCCATCGAATTCGTTACCGATGATTTCGGAGGTGAGTCAATCTGACGTGGCAGCGATACTTTACTCGTCGGGGACAACGGGGAAATCGAAGGGCGTGGTGCTCACGCATAGGAACTTGACAGCGACGGTTGCGGCATACGACGTCGTTCGGGTTATGAGGGAGAGACCAGCGGTGTGTCTTGTTACGGTACCGTATTTCCACGTGTTTGGTTTCACATACATTTTGAGGACGGTGGCTATGATGGAGACGTTGGTAGTTATGGAGAGGTTTGGGATTGGGAAGATGATGGCGGCGGTTGAGGGGTTAAGGCTGACTCACATTGTGGCGGCGCCGACGGTGGTGGTGACGATGACTAAGGAGGGGGTTACGGCGGTGGGGTACGACTTAACTTCGTTGAAAGGCGTCGTTTGTGGCGGCGCTCCGCTCGGAAAGGACAACGTGGCGGCTTTCAAATCCAAGTTCCCTCAAGTACTTCTCGTCCAGGGATATGGGTTAACTGAATCAACGGCCGGAGTTATACGAATACTGGGTCCTGAGGAGGCTAGTCGGGCAGGAACTACAGGTAGGNTGGTGTCGGAGATGGAGGCAAAAATAGTGAACCCCAACACAGGAGAGGCCTGCATGTCTCCTGGTGAACAAGGGGAACTCTGGCTTAGAGGACCTCCAATTATGAAAGGCATGTTGATTAGGGCATTATTTTGTTATGTCGGTGACTCAGAAGCAACTTCGGTTACTTTGGTGGATGGGTGGTTGAGGACTGGGGATATTTGCTATATCGATAATGAAGGATTCGTGTATGTTGTGGACAGGTTGAAAGAATTGATCAAATACAAAGGCTACCAGGTCTATCGATCNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCATACGACGTCGTTCGGGTTATGAGGGAGAGACCAGCGGTGTGTCTTGTTACGGTACCGTATTTCCACGTGTTTGGTTTCACATACATTTTGAGGACGGTGGCTATGATGGAGACGTTGGTAGTTATGGAGAGGTTTGGGATTGGGAAGATGATGGCGGCGGTTGAGGGGTTAAGGCTGACTCACATTGTGGCGGCGCCGACGGTGGTGGTGACGATGACTAAGGAGGGGGTTACGGCGGTGGGGTACGACTTAACTTCGTTGAAAGGCGTCGTTTGTGGCGGCGCTCCGCTCGGAAAGGACAACGTGGCGGCTTTCAAATCCAAGTTCCCTCAAGTACTTCTCGTCCAGATCACTTCCTCTCCTCACTTCCAGACTTCCACTCTTCCTCTTCCACTCTTCACTCTTCCCTCTTCCACCCTTCCGCCCTTCCACCCTTCCCTCTTCCCTCTTCCACTCTTCACTCTTCCACCCTTCGCAGCCGTCGCAACAAGGTCCGCCATCGCACCCTCGTTGTCATCGTCCAGTAGTCGCAGTCTCGTCGTCCAGTCTCACAAGATGTATTTCATTCCATCCTTTTATTGTTCATTAGCTAGACATGGTTCGCTTGTTGCCTTGTTCTGGTTCTGTGAGTTGGGGACTGCTGCTGCTGAAGAAAAGAAGGGTAGGAGATTGGGTGGATATGGGTTAACTGAATCAACGGCCGGAGTTATACGAATACTGGGTCCTGAGGAGGCTAGTCGGGCAGGAACTACAGGTTATGTCGGTGACTCAGAAGCAACTTCGGTTACTTTGGTGGATGGGTGGTTGAGGACTGGGGATATTTGCTATATCGATAATGAAGGATTCGTGTATGTTGTGGACAGGTTGAAAGAATTGATCAAATACAAAGGCTACCAGGTGGCCCCTGCTGAGCTAGAACAATTGCTCCAGTCTCACCCAGAGATAAACGATGCTGCAGTTATTCCGTACCCTGACGAGGATGCTGGCCAGGTGCCTATGGCTTTTGTGGTAAGGCAACCTCAAAGTTCGCTTGGCGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGTGTGGCATTTGTGGATTCCATACCAAAGAATGCAGCGGGGAAGATACTACGGAAGGACTTAAATAAAATTCTCTTCCAACGATTTAGCTCTAGGTTATAATAATGGTGGGACTTACGGTGGTCCATGTCACTAACTTCACCATCATGGTGAAGTTTCACCATCATGGTGAAGTGACTTCCTCACCATTGATATATTAATAAAATAATAGACGGTCCAGATCCTTTACAGGTTACCTCTTTAGAAGGTGTAGGGTAATATTTATTATAATTGTAGAGGAGGGTCTAGAGGGTACTATATTTACGAAAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00982	13403	23143	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000982s00031396.1	PF00501.23	AMP-binding	66	463	3.30E-80
Glyur000982s00031396.1	PF00501.23	AMP-binding	489	593	4.20E-10
Glyur000982s00031396.1	PF00501.23	AMP-binding	731	776	2.70E-10
Glyur000982s00031396.1	PF13193.1	AMP-binding_C	785	860	2.30E-16
Glyur000982s00031396.2	PF00501.23	AMP-binding	66	437	4.10E-70
Glyur000982s00031396.2	PF00501.23	AMP-binding	440	514	8.00E-05
Glyur000982s00031396.2	PF00501.23	AMP-binding	652	697	2.90E-10
Glyur000982s00031396.2	PF13193.1	AMP-binding_C	706	781	2.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.038
SRR1783600	control	0.036
SRR1783602	moderate drought stress	0.139
SRR1811619	moderate drought stress	0.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.037
DRR006520	Root Summer glycyrrhizin high producing strain	0.037
DRR006521	Root Winter glycyrrhizin high producing strain	0.038
DRR006522	Root Winter glycyrrhizin high producing strain	0.037
DRR006523	Root Summer glycyrrhizin low producing strain	0.076
DRR006524	Root Summer glycyrrhizin low producing strain	0.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.884
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.313
SRR2868004	Drought Stress (root)	0.131
SRR2967015	Control (root)	0.172

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.168
SRR9715740	Leaf	3.383
SRR9715741	Leaf	2.180
SRR9715739	Root	0.091
SRR9715742	Root	0.141
SRR9715743	Root	0.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.892
SRR8749028	MeJA induced 9h	0.435
SRR8749029	MeJA induced 9h	0.286
SRR8749030	Uninduced	0.260
SRR8749031	Uninduced	0.384
SRR8749032	Uninduced	1.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.240
SRR8400027	Control - Root	0.185