Gene detail

Gene detail information of Glyur000980s00032521

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12700.1	4.00E-32	ATP binding;nucleic acid binding;helicases
NR	XP_004512730.1	2.05E-64	PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Cicer arietinum]
Swissprot	tr\|P0C7Q7\|PPR38_ARATH	2.00E-37	Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor)
trEMBL	tr\|A0A072TIZ9\|A0A072TIZ9_MEDTR	6.00E-62	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH17387.1}

Sequence

Transcript Sequence

>Glyur000980s00032521.1
GTGCGTGCAATACGTTGGCATATGCAGACACAACCATCACGCCGCGGCGGTCGAAACCAGAAAGGTAACCTCTTCCTCTTGATTCCACAACCTCTCAGACTCACTTTCCTTTCGATGAGTTTGACTCGGTTTCTCTATTGCCGACGGATAGAAATAGGACGGTGACGTGGCAACTAAGCATGTCACTGTTACGGTTAAGGTTTCTTTCTCCAAATCCATCTTTTCTTCTTTCCTTTCCCTCAATAATCTCAAGGCTATTCTCTCACTCTCTGCCCCAACTTGCATTCACTCCCAATCACAATGTTGCTGTTTCTGATGATGATGATTTTGATGCTGTTGTTTCCTCCTTCAATCACATGCTCGGAATGTGTCCTACCCCATCCTTTGTCGAATTCGGCAAGGTTTTGACTTCCCTTGTGAAGACGAAGCACTACGCCACTGCTATTTCCCTTTCTCAACAAATGGAGGTCACTGGAATTATTCGGCCTGACATCGTTATTTTGAACATCTTGATCAATTGTTTCTGCCACCTGCATCAAATGACTCTTGCCTTCTCCGTGTTCGGCAAAATTCTAAAGATGGGTTACAAGCCGGATGCCATAACCTTGACTACTCTTATCAAGGGTTTATGTTTTAGTGGTGAGGTTGGGAAAGCATTGTTCTTTTATGATGAGGTGGTAGCGAAGGGATTTGAGCTGGACCAAATCAGTTACGGGACCCTCATCAATGGGTTATGTAGAATGGGACATACAAGAGCTGCCCTGCAGTTGCTGAGAGGCATCGAAGAGCCCAATGTGGAAGAATCTCTTATGCTTGGAAGCTTGTGGATGAGATGCATGATAGAGACTAGGGTGCGTGCAATACGTTGGCATATGCAGACACAACCATCACGCCGCGGCGGTCGAAACCAGAAAGGTAACCTCTTCCTCTTGATTCCACAACCTCTCAGACTCACTTTCCTTTCGATGAGACGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00980	68574	70470	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000980s00032521.1	PF13041.1	PPR_2	103	151	8.30E-13
Glyur000980s00032521.1	PF12854.2	PPR_1	169	199	6.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.210
SRR1783600	control	1.051
SRR1783602	moderate drought stress	0.671
SRR1811619	moderate drought stress	0.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.397
DRR006520	Root Summer glycyrrhizin high producing strain	1.192
DRR006521	Root Winter glycyrrhizin high producing strain	2.245
DRR006522	Root Winter glycyrrhizin high producing strain	1.991
DRR006523	Root Summer glycyrrhizin low producing strain	1.300
DRR006524	Root Summer glycyrrhizin low producing strain	1.241
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.008
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.982

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.206
SRR2868004	Drought Stress (root)	4.787
SRR2967015	Control (root)	4.673

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.166
SRR9715740	Leaf	0.159
SRR9715741	Leaf	0.133
SRR9715739	Root	0.007
SRR9715742	Root	0.181
SRR9715743	Root	0.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.909
SRR8749028	MeJA induced 9h	2.568
SRR8749029	MeJA induced 9h	0.859
SRR8749030	Uninduced	0.612
SRR8749031	Uninduced	1.337
SRR8749032	Uninduced	0.549

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.588
SRR8400027	Control - Root	1.390