Gene detail information of Glyur000980s00032517 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 4.00E-98 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_003620113.1 | 0 | Resistance protein PRG [Medicago truncatula] |
| COG | YP_003512632.1 | 5.00E-12 | SARP family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 8.00E-114 | TMV resistance protein N |
| trEMBL | tr|G7KK77|G7KK77_MEDTR | 0 | Functional resistance protein KR1, putative {ECO:0000313|EMBL:AES76331.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00980 | 28438 | 32654 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000980s00032517.1 | PF01582.15 | TIR | 22 | 161 | 4.00E-35 |
| Glyur000980s00032517.1 | PF00931.17 | NB-ARC | 214 | 464 | 7.70E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.064 |
| SRR1783600 | control | 0.028 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.479 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.271 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.370 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.568 |
| SRR2868004 | Drought Stress (root) | 5.659 |
| SRR2967015 | Control (root) | 8.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.234 |
| SRR8749028 | MeJA induced 9h | 3.802 |
| SRR8749029 | MeJA induced 9h | 2.458 |
| SRR8749030 | Uninduced | 2.112 |
| SRR8749031 | Uninduced | 1.053 |
| SRR8749032 | Uninduced | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.265 |
| SRR8400027 | Control - Root | 1.007 |