Gene detail information of Glyur000979s00026392 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53720.1 | 1.00E-18 | cation/H+ exchanger 20 |
| NR | AES81712.2 | 4.44E-29 | cation/H+ exchanger 3 [Medicago truncatula] |
| Swissprot | tr|Q9M353|CHX20_ARATH | 7.00E-27 | Cation/H(+) antiporter 20 |
| trEMBL | tr|G7KZM7|G7KZM7_MEDTR | 2.00E-29 | Cation/H+ exchanger 3 {ECO:0000313|EMBL:AES81712.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00979 | 99673 | 100527 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.648 |
| SRR1783600 | control | 8.513 |
| SRR1783602 | moderate drought stress | 4.877 |
| SRR1811619 | moderate drought stress | 4.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.114 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.599 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.585 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.709 |
| SRR2868004 | Drought Stress (root) | 65.323 |
| SRR2967015 | Control (root) | 76.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.539 |
| SRR9715740 | Leaf | 0.594 |
| SRR9715741 | Leaf | 0.914 |
| SRR9715739 | Root | 9.887 |
| SRR9715742 | Root | 9.559 |
| SRR9715743 | Root | 11.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.674 |
| SRR8749028 | MeJA induced 9h | 10.230 |
| SRR8749029 | MeJA induced 9h | 2.058 |
| SRR8749030 | Uninduced | 4.511 |
| SRR8749031 | Uninduced | 7.011 |
| SRR8749032 | Uninduced | 5.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.623 |
| SRR8400027 | Control - Root | 25.622 |