Gene detail

Gene detail information of Glyur000979s00026391

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53720.1	0	cation/H+ exchanger 20
NR	XP_003625495.1	0	K(+)/H(+) antiporter [Medicago truncatula]
COG	YP_003950769.1	4.00E-74	cation transporter/universal stress family protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9M353\|CHX20_ARATH	0	Cation/H(+) antiporter 20
trEMBL	tr\|Q2HVU7\|Q2HVU7_MEDTR	0	Sodium/hydrogen exchanger {ECO:0000313\|EMBL:ABD32190.1}

Sequence

Transcript Sequence

>Glyur000979s00026391.1
ATGGAGCACGCCGACGCTAGAATCGGTGGCGAGCATAGGCCTTCTGTTCTTCCTCTTCCTGGTGGGTCTGGAACTCGACCTCAACTCCATCCGCCGCAGCGGGCGGAGAGCATTCAGCATAGCCGCCTTCGGGATAACCGTCCCCTTCGTCTCCGGCATCGGCGTGGCCATCATCCTCCGCAAGACCGTCGACGGCGCCGACAAGGCTTCGGACAGTTCCTCGTCTTCATGGGCGTCGCCCTCTCCATAACCGCCTTCCCNGTCCTCGCACGAATCCTAGCAGAGCTCAAACTCCTCACCACGCGCGTGGGGGAAACCGCCATGGCAGCCGCCGCGTTCAACGACGTCGCCGCGTGGATCCTACTCGCCCTCGCAATCGCCCTCGCCGGTAACGGCACCGACGGCGGAGGAGGAAAGAGCCCCCTGGTATCCGTCTGGGTTCTCCTCTCCGGTGTCGGTTTCGTCGTTTTCATGATGGTGGTTATCCGACCCGCGATGAAGCGCGTGGCGCAGAGATGCTCAATGGAGAACGAGGCGGTTGATGAGGTTTATATATGTTTGACACTTGCGGGGGTGATGGTGTCGGGTTTCGTAACGGACTTGATTGGGATCCACTCGATATTCGGCGCGTTTGTGTTTGGGTTNACAATACCCAAGGGTGGGAACTTCCCCCAGAGGTTGATAGAGAGGATTGAGGATTTCGTNTTGGGTTTGCTTCTGCCTCTCTACTTCGCATCCAGTGGGTTGAAAACTGACGTCACTAAGATCAGTGGCGGCAAGGCGTGGGGGCTGTTGGTTCTCGTGATCACCACCGCTTGTGCTGGGAAGATTCTGGGGACCTTCGTCGTCGCTATCATGTGCATGATTCCCGTTAGGGAGTCACTTACACTTGGCGTNCTCATGAACACCAAGGGCCTCGTTGAGCTCATCGTACTCAACATTGGAAAGGAGAAAAAGGTTTTGAATGACGAAATATTTGCAATCTTGGTACTCATGGCTCTGTTCACCACTTTCATCACAACCCCAGTAGTGATGGCCATTTACAAACCAGCTAGGGATGGCATCACAACCAAGACTTGTCGCAAGCTAGGTGACCTCTCCTCCCACTCCAAAGATGATGACAACAACAACAACAACAACAACAAGACGGTGGACGAGCTTCGAGTCCTTGCCTGCATCCATGGTCCTAGCAACATCCCCTCCATCATCAGCCTCATCGAATCGACACGTAGCACAAAGAACTCCCTCCTCAAGGTCTTCATCATGCACCTCGTCGAGCTCACAGAACGCTCCTCCTCCATCATCATGGTCCANCGCGCTCGCAAGAACGGTTTCCCTTTCTTCAATCGATTCAACCGCGATGAGTGGTATAACCGCCTTGCAGGGGCCTTCCAGGCCTACAGCCAACTGGGTCGGGTCAAGGTCCGGTCCACTACAGCCATCTCGTCTCTGTCCACAATGCATGAGGACATCTGCCACGCGGCGGAGGAAAAGCGAGTCACGATGATCGTGATGCCCTTCCATAAACAGTGGAAGATAGAAGCTGACGAGGACAATGAGGGCCATGAGGTGGTGGTGTTGGAGAATGCAGGCCATGAGTGGAGAGGGGTGAACCAAAGGGTGCTTAAGAATGCACCTTGCTCCGTGGCCGTGCTTGTGGACCGAGGATATGGAATTGGGCCTCAGACTAATTTGGGCTCAAAAGATGCCACTATGGCCCAACGAATATGCATAGTGTTCTTTGGTGGGCCCGATGATCGAGAGGCCCTAGAATTGGGGAACAAAATGGCTGAGCACCCAGCAGTTGCAGTGACCATTGAGTTGGATGAGAAGGCAGTGGAAGAGTTTCGAAGCAAGTGGGATGAAAGGGTGAAGTATGTAGAGAAGGAGAGTAGCAACGTTGTGGAGGAGGTGATAGCCATAGGGGGAAGTGGGGAATACGATCTCATAATCGTTGGGAAGGGTCGGTTTCCGTCGACCATGGTGGCGGAACTGGCGGAGAGGCAAGCGGAGCACGCGGAGTTAGGGCCCATAGGGGACATTCTAGCGTCGTCGACGGGACACAAGATGGTGTCGTCGGTGTTGGTTATTCAACAACATGATGTGGAATTGACGGAGGAGGCTCCAATGTACAAAGTCAAGGTGCATGATGAAAACGTTGTCGTTGAGACCAAGTCTTCGTCTCGCAGGCACGAGATTTCGATGGCCAACGACAATGCAGTGTAACAATATATATATATATATATATATATGTATAGTTTTTGGGATCCTTTTTTTACACGTAAGAGGAGACAGCCCCTAAGTAACATACCATGATGATCCAAAGGAGAGATCATCTCAAACCACAAAAATGTCCCTCTTTATAATATTGAAGTTGTGTTTAAAGTAAATATGTAATTATCCTTTAATTTTGGTGGGTTTATAATAAAATACCACTGGGTGCACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00979	93233	99220	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000979s00026391.1	PF00999.16	Na_H_Exchanger	75	344	8.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.219
SRR1783600	control	14.180
SRR1783602	moderate drought stress	9.587
SRR1811619	moderate drought stress	9.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.666
DRR006520	Root Summer glycyrrhizin high producing strain	4.614
DRR006521	Root Winter glycyrrhizin high producing strain	1.626
DRR006522	Root Winter glycyrrhizin high producing strain	1.559
DRR006523	Root Summer glycyrrhizin low producing strain	4.143
DRR006524	Root Summer glycyrrhizin low producing strain	4.344
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.785

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.528
SRR2868004	Drought Stress (root)	191.665
SRR2967015	Control (root)	214.985

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.796
SRR9715740	Leaf	2.059
SRR9715741	Leaf	4.757
SRR9715739	Root	27.011
SRR9715742	Root	23.548
SRR9715743	Root	21.369

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.446
SRR8749028	MeJA induced 9h	16.416
SRR8749029	MeJA induced 9h	5.434
SRR8749030	Uninduced	13.791
SRR8749031	Uninduced	16.090
SRR8749032	Uninduced	13.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.005
SRR8400027	Control - Root	55.654