Gene detail information of Glyur000979s00026380 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07790.1 | 3.00E-48 | Histone superfamily protein |
| NR | AFK45166.1 | 3.56E-87 | unknown [Lotus japonicus] |
| Swissprot | tr|Q1S9I9|H2B1_MEDTR | 3.00E-75 | Probable histone H2B.1 |
| trEMBL | tr|I3SY24|I3SY24_LOTJA | 1.00E-87 | Histone H2B {ECO:0000256|RuleBase:RU000451} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00979 | 21438 | 21863 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000979s00026380.1 | PF00125.19 | Histone | 50 | 117 | 2.20E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 101.800 |
| SRR1783600 | control | 103.860 |
| SRR1783602 | moderate drought stress | 72.657 |
| SRR1811619 | moderate drought stress | 75.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 123.269 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 137.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.360 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.851 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 126.369 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.616 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.142 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 402.741 |
| SRR2868004 | Drought Stress (root) | 279.271 |
| SRR2967015 | Control (root) | 270.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 126.062 |
| SRR9715740 | Leaf | 89.757 |
| SRR9715741 | Leaf | 122.716 |
| SRR9715739 | Root | 170.622 |
| SRR9715742 | Root | 113.564 |
| SRR9715743 | Root | 118.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 550.438 |
| SRR8749028 | MeJA induced 9h | 342.152 |
| SRR8749029 | MeJA induced 9h | 766.026 |
| SRR8749030 | Uninduced | 391.076 |
| SRR8749031 | Uninduced | 606.053 |
| SRR8749032 | Uninduced | 340.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 167.977 |
| SRR8400027 | Control - Root | 161.112 |