Gene detail information of Glyur000979s00026378 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59840.1 | 4.00E-91 | Ras-related small GTP-binding family protein |
| NR | XP_003625516.1 | 1.92E-156 | Ras-like protein [Medicago truncatula] |
| COG | YP_008431664.1 | 9.00E-30 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| Swissprot | tr|O24466|RAE1A_ARATH | 2.00E-144 | Ras-related protein RABE1a |
| trEMBL | tr|G7L0L9|G7L0L9_MEDTR | 7.00E-157 | RAB GTPase-like protein A5B {ECO:0000313|EMBL:AES81734.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00979 | 2340 | 5709 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000979s00026378.1 | PF00071.17 | Ras | 17 | 178 | 1.60E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.216 |
| SRR1783600 | control | 28.066 |
| SRR1783602 | moderate drought stress | 17.878 |
| SRR1811619 | moderate drought stress | 17.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.980 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.226 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.953 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.155 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.788 |
| SRR2868004 | Drought Stress (root) | 40.631 |
| SRR2967015 | Control (root) | 41.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.940 |
| SRR9715740 | Leaf | 16.550 |
| SRR9715741 | Leaf | 23.448 |
| SRR9715739 | Root | 13.214 |
| SRR9715742 | Root | 12.593 |
| SRR9715743 | Root | 14.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.786 |
| SRR8749028 | MeJA induced 9h | 32.263 |
| SRR8749029 | MeJA induced 9h | 22.993 |
| SRR8749030 | Uninduced | 19.615 |
| SRR8749031 | Uninduced | 1.482 |
| SRR8749032 | Uninduced | 11.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.792 |
| SRR8400027 | Control - Root | 32.233 |