Gene detail

Gene detail information of Glyur000978s00031823

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G26230.1	TCP-1/cpn60 chaperonin family protein
NR	XP_006574985.1	PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Glycine max]
COG	YP_007146979.1	chaperonin GroL [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9C667\|CPNB4_ARATH	Chaperonin 60 subunit beta 4, chloroplastic (Precursor)
trEMBL	tr\|I1JEN0\|I1JEN0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G13980.1}

Sequence

Transcript Sequence

>Glyur000978s00031823.1
ATGGAGCTGAACAAGGACCTTCCTTCAGCAGCTGTGAGTAGAAGAAGAGAGTTCAGCATTGTTCAACTTTGTTGCTTTCAAAACATAAAGCTAAACATTTGGCAACATAGCCATTCCAAGAAAACCAAAGCCATGGCATCTTCTTCATTTTCCTTTGCAAACCCATCATCACTTCTCGGATACCGAACTTCACCTTCTTCAGCACTAAACCCAAGAGCAATGGCCAAAGAGCTTCACTTCAACCATGATGGTGCAACCACAAAGAAGCTTCTGGCAGGGGTGGACCTTGTGGCAGAGCTGCTTGGTGTTACTTTGGGTCCTAAGGGGAGAAATGTTGTGCTGCATAACAAGTATGGGCCACCCAAGATAGTAAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGATCCGTTGGAGAATGTTGGAGTTAAATTGGTGAGACAAGCTGGTGCAAAGACGAATGACCTAGCTGGTGATGGATCAACTACATCTGTTGTTCTTGCTCATGGCTTAATCAAAGAAGGGACTAAGGTTATTGCAGCTGGAATGAATCCTGTCCAAATTGCTCGTGGGATTGAGAAGACGGCAACAGCACTTGTTTCTGAACTCGCTTTGATGTCTAGAGAAGTTGAGGATCATGAACTCACAGATGTTGCAGCTGTCAGCGCGGGGAACGATTANGTAGTTGGAAACATGATTTCTGAGGCTTTGCATCAAGTAGGCAGAAGAGGAGTAGTGACAATTGAGAAAGGGAAGTGTACTGAGAATAGTCTAGAGATTGTAGAGGGAATGCAATTTGATCGCGGATATCTGTCGCCATACTTTGTCACGGATCGAAGAAAGATGACAGTTGAACTTCACAACTGCAAGTTGCTTTTGGTGGACAAAAAAATCACAAATGCAAAGGAGCTGCTTAACATGTTGAAAACTGCAGTTAAAGAGAAGTATCCAATTGTGATAGTTGCAGAGGGAATTGAGCAGGAAGCCCTGGCTCCAGTTATTAAAAATAAACTCAGGGGTATGCTTAAGGTAGCTGCTATTAAGGCTCCTGCCTTTGGTGAACGCAAGACACACTATTTAGAAGATATTGCCATCTTGACTGGAGGTACTGTAATAAGGGAAGATATGGGTTTCACCCTAGAAAAGGCCAGCAAGGATGTTCTGGGTTCTGCTACCAAAGTTGTCATAACAAAGGATTCTACCGTAATTGTAACTGATGGGAGTACTCGAGCAGCTGTTGAGAAGAGGGTTTATCAACTTAGGAGGCTTGTTGAGAATACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGGATAGCAAGATTATCAGGGGGTATTGCCATTCTTCAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGACAAACAATTGAGAATAGAAGATGCCTTAAATGCGACCAAGGCAGCAATAGAGGAAGGTGTAGTGGTTGGTGGTGGATGTAGCCTTTTAAGGCTATCCAAGAAGGTGGATGGCATAAAAAATCTCCTGGACAATGAAGAGCAAAAGATTGGAGCTGAAATCTTCAAAAAAGCTTTGAGCTATCCTACAAGAATGATAGCAAAAAACGCCGGCGTAAATGGCAATGTTGTCATAGATAAGGTTTTATCAGATGATAACGTGAATTTTGGTTACAATGCTGCTAGAGACTGTTATGAGGATCTCATGAAGGCTGGAATCATGGATCCAACAAAGGTGGTTAGGTGTTGTATAGAGCATGCAGCTTCTGTGGCCAAGGCGTTTCTAACATCTAATGCTGTTGTGATTGACATCAAGGAATTACAACCCATAATACCACAAAGAAAGCCAAATCCAATGGCTACCTCAGGTTTAGGACCAATTGGCTTTTGAAAAAGGAAATTTGTACAATTTAGTTCAGCCTTAATACTATTCAGGAAGACCAACCAAGAAGCATGGCTTGACTAGAAAATCCATATATATATGTGCTTTGTACAAATGGTGGCATTTCATTGATTGACCCGGGACCCACAAATGAAGTTAATTAAAATTAAAATGGCTCTGACTAGCTNGAAGGACTCCAACAATGGGAAGTGCAAAACATGTAGGCAGAAGGAAAATGTTTGCCGCTTTCAGTGACTACTACCGTGTCCAATCCTGTAGATACCCAATGTATACAGTTTGAGTGCTTGTATCATCTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00978	84819	94088	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0042026 protein refolding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000978s00031823.1	PF00118.19	Cpn60_TCP1	97	599	4.20E-123

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.120
SRR1783600	control	1.123
SRR1783602	moderate drought stress	5.368
SRR1811619	moderate drought stress	5.522

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.144
DRR006520	Root Summer glycyrrhizin high producing strain	4.161
DRR006521	Root Winter glycyrrhizin high producing strain	19.722
DRR006522	Root Winter glycyrrhizin high producing strain	18.916
DRR006523	Root Summer glycyrrhizin low producing strain	6.682
DRR006524	Root Summer glycyrrhizin low producing strain	6.550
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.290
SRR2868004	Drought Stress (root)	0.236
SRR2967015	Control (root)	1.757

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.786
SRR9715740	Leaf	3.237
SRR9715741	Leaf	0.742
SRR9715739	Root	0.021
SRR9715742	Root	0.749
SRR9715743	Root	0.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.988
SRR8749028	MeJA induced 9h	0.212
SRR8749029	MeJA induced 9h	0.164
SRR8749030	Uninduced	0.128
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.047
SRR8400027	Control - Root	1.977