Gene detail information of Glyur000978s00031821 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07525.2 | 1.00E-34 | autophagocytosis-associated family protein |
| NR | XP_003521016.1 | 3.65E-85 | PREDICTED: ubiquitin-like-conjugating enzyme ATG10-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8VZ52|ATG10_ARATH | 6.00E-41 | Ubiquitin-like-conjugating enzyme ATG10 |
| trEMBL | tr|I1JME1|I1JME1_SOYBN | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G23850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00978 | 31846 | 37082 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000978s00031821.1 | PF03987.10 | Autophagy_act_C | 108 | 160 | 2.30E-10 |
| Glyur000978s00031821.2 | PF03987.10 | Autophagy_act_C | 108 | 160 | 2.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.886 |
| SRR1783600 | control | 3.954 |
| SRR1783602 | moderate drought stress | 4.225 |
| SRR1811619 | moderate drought stress | 4.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.873 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.526 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.551 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.638 |
| SRR2868004 | Drought Stress (root) | 4.910 |
| SRR2967015 | Control (root) | 5.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.016 |
| SRR9715740 | Leaf | 2.139 |
| SRR9715741 | Leaf | 2.138 |
| SRR9715739 | Root | 0.727 |
| SRR9715742 | Root | 1.577 |
| SRR9715743 | Root | 1.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.133 |
| SRR8749028 | MeJA induced 9h | 2.246 |
| SRR8749029 | MeJA induced 9h | 1.594 |
| SRR8749030 | Uninduced | 2.934 |
| SRR8749031 | Uninduced | 2.373 |
| SRR8749032 | Uninduced | 1.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.333 |
| SRR8400027 | Control - Root | 8.418 |