Gene detail

Gene detail information of Glyur000978s00031819

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25470.1	5.00E-82	bacterial hemolysin-related
NR	KEH18036.1	2.09E-135	ribosomal RNA large subunit methyltransferase J [Medicago truncatula]
COG	YP_003319465.1	1.00E-62	hemolysin A [Sphaerobacter thermophilus DSM 20745]
trEMBL	tr\|A0A072TLE1\|A0A072TLE1_MEDTR	8.00E-136	Ribosomal RNA large subunit methyltransferase J {ECO:0000313\|EMBL:KEH18036.1}

Sequence

Transcript Sequence

>Glyur000978s00031819.1
GGGGTTAGCCGTTTCAGACTTTCAGTCCTTGCATCTTCATCTTCCTCAAGTTTTCTAATCCTTCCTTCTTTGTTCAATCGTTCCTTCAGAGTTCAGGTTTTCCATCTTCCTCATCGCGCCTCTTCGAAGTTCGCCTTCCTCTTCGCATATTGAGAAATGGCGTTACAATCCGTAGCAGTAACCATCTCACGAGGTTTGCACAGCGAGACAACCTTATCTTTCCTTTCTTCCTTACGAATTCTGAAGCTCCCAGGCACAGGAAAAAGCGGCTGGATGAAATATGTCTTGAAAAATATCAGCAATATAGCAGATCCATCATCCAGTCATGGATTTTGCAAGGTGATAAATAAAGCTGGTACCCCTGTATCTGAAAAAGCTGTTGTGGAGATAATTGCTGAAGTTCCCAAATATGTATGTAGAGCTGGACATAAGTTGGAAGGTGCCATTGAACAGCTCGGTGTTGATGTTGNTGGTAAAGTGGCTCTTGATTGTGGGCTGTCAACTGGAGGATTTACTGACTGCTTACTGCAGTATGGTGCATCACATGTTTATGGAGTTGATGTAGCGGACAAAATTCGAAGAGATGAACGTGTAACTGTTATAGAGCGGACAAATTTAAGATATCTCACAGGACTCCCACAAAATGTTGATTTGGTGACTCTAGACCTCTCGTTCATCTCTATTCTTCTGGTCATGCCTGCCGTGGTCAATGTCATGAAGGAAGATGCTGCATTAGTGACCTTGGTTAAACCACAATTTGAAGCTCATAGATCTCAAGTAGGAAAAGGGGGGATAGTGAAAGATCCAATTGTCCATCAAGAGGTTCTTGAGAAGATTACAAAGGGGGTGGAGAATTTTGGTTTCTGCAGTNAAGGTTGGATTGAGTCTCCTCTCAAAGGCGCGGAGGGTAATACAGAATTCCTTGTTCACTTCAGCAGAACCCATAATAAAGGTTCCTAAATCATGAAGAAATTGGAGAATTTATACTGAATGCATTTCTNTAACCTTCAAAAAAGGTTGTCATTTTGGAAGATGTATCAGGCAGGAGAGCTGTATTCCTGGTTGTTGGTGCCACTAAATGGAAGTGGTGAAATTTTGTATGAACCATTGAAACANAAGAGAATGTGATGAGTAACATAAACATGGTATTTTGAGCCTGCAAATGTAATTTACCAAAGCTGCATCTGGTAAAATTTCTTTTTCACCTATGATCTTGGACATATATTTTCCTTTTGGTTTCACATGAAAACTTAACGAGGAGCTGCTTAGCCTTATTAGAATTGGATAATTGTTGGTTCATCCTTTTGGTCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00978	26779	31144	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032259 methylation

molecular_function

GO:0003723 RNA binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000978s00031819.1	PF01728.14	FtsJ	85	259	4.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.790
SRR1783600	control	5.815
SRR1783602	moderate drought stress	8.235
SRR1811619	moderate drought stress	8.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.277
DRR006520	Root Summer glycyrrhizin high producing strain	9.110
DRR006521	Root Winter glycyrrhizin high producing strain	11.682
DRR006522	Root Winter glycyrrhizin high producing strain	11.514
DRR006523	Root Summer glycyrrhizin low producing strain	6.577
DRR006524	Root Summer glycyrrhizin low producing strain	6.542
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.927
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.573
SRR2868004	Drought Stress (root)	7.405
SRR2967015	Control (root)	7.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.746
SRR9715740	Leaf	15.868
SRR9715741	Leaf	12.335
SRR9715739	Root	1.756
SRR9715742	Root	4.383
SRR9715743	Root	4.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.336
SRR8749028	MeJA induced 9h	4.725
SRR8749029	MeJA induced 9h	5.204
SRR8749030	Uninduced	3.097
SRR8749031	Uninduced	1.048
SRR8749032	Uninduced	1.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.595
SRR8400027	Control - Root	12.650