Gene detail

Gene detail information of Glyur000977s00040609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77720.1	0	putative protein kinase 1
NR	XP_003614790.1	0	Serine/threonine protein kinase [Medicago truncatula]
COG	YP_006641017.1	5.00E-21	serine/threonine-protein kinase pknB [Nocardiopsis alba ATCC BAA-2165]
Swissprot	tr\|Q5QN75\|M2K1_ORYSJ	5.00E-23	Mitogen-activated protein kinase kinase 1
trEMBL	tr\|G7K8X9\|G7K8X9_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES97748.1}

Sequence

Transcript Sequence

>Glyur000977s00040609.1
GTTGTTCTCTTTTGAGAATTCCTCAACAGGTGCCACGCAATCACATAGCATAAGGCCAAAGCGTTCCGCTGTTGCTCAAGCGAAGGTCACGAACGACAAGTCTGAAGACTTCCCAACGAGTCAGGCTCAGTCACGGAAGGACTCGCTTCCACTCGGAAAGGGCACTACTGCCTCTGCTGTTGGAGAGGGGGTCAATGATGTAAAGGTCACTGAGTTGGAGACCATATCATCTCATATGGGTTCACTTGCATTGACAGAAACAGAGAATTTGGCGAGCAGGCTACCTGAAGCATCAATTGGATTCAATCAAGACTTGATATACCAAAATATTCAGCAGGCAGAGCCTGAAAAAAGTTTGATATCTGAGGGAGGCAAGATTTCTATGTTGCCAAAGAGAAAAATAGTTACTGAAGATCATCTGCAGCAATTCAATAACTTTTTAAGCCAACCAGCTACACAATCTTTGGTAGTGGGACCCTCGTGTGCGACAACTACATCAGTCCATTCAGCTTCAGCTCCCATGTTGAATTCTTTAACTCGTTCTTCTCATTCCCATGCAGATAGTGGCTCAAATGTGGCCGCAGAACCTTGTGGGAACCTTAATCCTCATCCAACAACTAAAGGGGTTGTTAAATCAGCAAATAATTCCCTAAAAGACACCAATAGAACATCAACTGATCAGGCACCAAGTGCTGTCCAAGCTTGTAATTCACTTACTGATGCCGAGCTGACATTTAAGGAGAGCGACCCATCCAAGGAGCAGCATGGATGTGTGTTTAAGGAAACTAGCATTTCAAAATATGCTTCTTGTCATGATGACATGTTAACTAAGGGGAAAGAGTCTGCAGTTGCTATCAACATACAGCCTGAGGCTCCAACTGCATCTTNGGATGTGAAGTTGGAGTCTTCAAAGTCAGAAAAACCAGAGAAAGCTGCAAGCTGTAAAGGATCATCAGGTGCTCGGAAAAGGACCTATGACCCTGATATGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCAGACTGTAAAATCTATGCGCTTAAAAAGATAAAGCTAAAGGGTCGTGATTATGCCACTGCATATGGATTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAAAGGAAANAATAATATTATACAACTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAGGGAGTCATGAATAGCTCCTTCAATAATAAGGATGGTAAAGTCAAGGATGATGGATATATATACATGTTACTTGAATATGGGGAAATTGATTTAGCTCATATGTTGTCTCAGAAGTGGAAGGAACTGGANAGACACAACCAAACCATAGATGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAGGAACGTATTGTGCATTCTGACTTGAAGCCAGCAAACTTCCTCCTTGTCAAAGGTTCCCTAAAATTGATTGACTTTGGTATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGGGATTCACAGGTTGGTACTCTAAATTACATGTCACCAGAGGCATTTATGTGCAATGAGAGTGATGCGAATGGAAACATCATAAAGTGTGGTCGGCCATCAGATATCTGGTCCTTAGGCTGCATCCTTTATCAAATGGTCTATGGGAGAACACCCTTTTCAGATTACAAGACATTTTGGGCAAAAGTCAAANTTATAACTGATCCAAATCATCAAATTACTTATGAACCAGTTTCAAACCCATGGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTACTCCAACACCCTTTTCTTGCTCCTCCAATTCCATGTCATCCATCTTTGTCCCAAGACCATACCTTTAAGTTGCTGGAACTTATTGCTGAAACTTGTACGTATGATCCAGAAGCATTGCAGCTGTGTTGTCAGCTCCAGCAGGTGCTCGGTAACCCCTTCAAGTTAATAACTCCTGATTCATCAAATTCGCGAGAACAACAGCGTAAGTTGCTGTCCCGAATATCTGAACTCTGTTCTCAGCTGCAGGGACGATTGATAAATACTGATAAAGAATAAGTAGGTGATGAAGGAAGGTAGTGGTTTCTTATAGGTGATTATTCCAATTTTTGGTGATTGTTATACAATCTGTGTTTTCATTATACTTGTAACAAAGGTAGTTTTGTTGTCATGTATTTTTCATGGGACAACAGCTTATGGTGTCTCGTTGTATTCCCTATTATGTTGAAGAGCTAAAATGTGTGTAGCGAGTGAATCATTAATAGAATGTTCTGTGTATATTAATTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00977	74368	90538	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08866	TTK, MPS1	EC:2.7.12.1	Cell cycle	map04110
			Cell cycle - yeast	map04111

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000977s00040609.1	PF00069.20	Pkinase	260	553	3.90E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.226
SRR1783600	control	1.250
SRR1783602	moderate drought stress	1.391
SRR1811619	moderate drought stress	1.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.202
DRR006520	Root Summer glycyrrhizin high producing strain	2.310
DRR006521	Root Winter glycyrrhizin high producing strain	0.934
DRR006522	Root Winter glycyrrhizin high producing strain	0.957
DRR006523	Root Summer glycyrrhizin low producing strain	1.962
DRR006524	Root Summer glycyrrhizin low producing strain	1.859
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.892
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.906
SRR2868004	Drought Stress (root)	4.823
SRR2967015	Control (root)	6.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.595
SRR9715740	Leaf	1.278
SRR9715741	Leaf	1.457
SRR9715739	Root	0.450
SRR9715742	Root	1.343
SRR9715743	Root	1.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.613
SRR8749028	MeJA induced 9h	4.001
SRR8749029	MeJA induced 9h	2.578
SRR8749030	Uninduced	1.499
SRR8749031	Uninduced	0.891
SRR8749032	Uninduced	0.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.773
SRR8400027	Control - Root	5.613