Gene detail information of Glyur000977s00040608 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G38131.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004513833.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 3.00E-71 | Uncharacterized protein At1g04910 |
| trEMBL | tr|K7M7F1|K7M7F1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G33340.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00977 | 19683 | 31271 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000977s00040608.1 | PF10250.4 | O-FucT | 165 | 498 | 2.20E-87 |
| Glyur000977s00040608.1 | PF10250.4 | O-FucT | 568 | 611 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.893 |
| SRR1783600 | control | 1.926 |
| SRR1783602 | moderate drought stress | 1.377 |
| SRR1811619 | moderate drought stress | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.237 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.661 |
| SRR2868004 | Drought Stress (root) | 3.697 |
| SRR2967015 | Control (root) | 3.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.284 |
| SRR9715740 | Leaf | 2.317 |
| SRR9715741 | Leaf | 1.164 |
| SRR9715739 | Root | 2.134 |
| SRR9715742 | Root | 3.375 |
| SRR9715743 | Root | 3.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.681 |
| SRR8749028 | MeJA induced 9h | 0.503 |
| SRR8749029 | MeJA induced 9h | 0.242 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.647 |
| SRR8400027 | Control - Root | 7.466 |