Gene detail

Gene detail information of Glyur000976s00028356

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12130.1	1.00E-108	integral membrane TerC family protein
NR	KHN39125.1	0	Putative membrane protein [Glycine soja]
COG	YP_001542796.1	5.00E-59	integral membrane protein TerC [Herpetosiphon aurantiacus DSM 785]
trEMBL	tr\|A0A072VLM3\|A0A072VLM3_MEDTR	2.00E-179	Integral membrane protein, TerC family protein {ECO:0000313\|EMBL:KEH42313.1}

Sequence

Transcript Sequence

>Glyur000976s00028356.1
AAACAACTTATCTTGTTATAATTCTGGTGCAAACGGAACGGTGGAAGAAGAGAAGAGGATCAACGCTCAATTCCCAATCTCTCTTCTCTCCCCTCTCCCTCTCCCTCCCTGAAGAGCTATGGGATTGGCTTCTGTTGTTCACAACGGCGTCCAAATTCCATTCAACTTCCATCACCGCCTTCTCAGGGTTTCACACTCACCTTCACCTTCCAAATGCTCAACACTCCACGTTGTTCACCACAATCCTGTCTCTGCATTTTGCTCAGTGTATCATTGTCGTGGTCCTTACCGTGTTCCGGTTCCATGCTCCAGACGAATTGGTCAGGATATTGGATGGATTACATGCTTCAGAGCTATGGGATTGGCTTCTGTTGTTCACAACGGCGTCCAAATTCCATTCAACTTCCATCACCGCCTTCTCAGGGTTTCACACTCACCTTCACCTTCCANATGCTCAACACTCCACGTTGTTCACCACAATCCTGTCTCTGCATTTTGCTCAGTGTATCATTGTCGTGGTCCTTACCGTGTTCCNGTTCCATGCTCCAGACGAATTGGTCAGGATATTGATGGATTACATGCTTCAGAAGTAAAGAGGATTACTGCTCAACAAAATGATGACACTAGCAATGTTGAGACATCTCATACCGAGGAATCACTGGNAAATGAAACTTACAGTTCCTCTGTTAGAACTGTGGCCTTATGGGTGTGCGCCGCGGTGGCATTTGGTGTTGGTTTGGGTTTTAAAGAAGGTTTTGGCAAGGCATCCGAATTCTTTGCTGGATACATATTGGAGCAAAGTCTCTCAGTAGATAATCTCTTTGTCTTTGTTCTAATATTCAAATACTTCAAAGTGCCAAGCTCGTATCAGAGTCGTGTACTTTCCTATGGTATTGCTGGTGCAGTTGTCTTTCGCCTGACATTAATACTNCTTGGAACAGCCACCCTTCAGAGCTTTGAGGCAGTCAACCTTCTATTGGCCGCAATATTGCTCTACTCATCATTTAAGCTATTTGCCAGTGAAGAAGATGAGTCTGACTTATCTGATAACTTTTTGGTGAAGACATGCCAGAAATTGATCCCTGTAACAACATATTATGATGGAAACCGGTTCATAACAAATCAGGATGGGATGTGGAAAGTTGACTCAATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTNTAGCGTTTACTTCTAATCTTTTTGCCATTTTGGGTTTAAGGTCACTTTACTTGATAATTTCCGAGGGTATGTCAGAATTGAATTACTTGCAGCCATCCATTGCTGTTGTTCTGGGATTTATTGGGTGCAAGATGATCTTGGACTATTTTGGAATCCATGTCTCAACGGAGGCATCTCTTGGTTTTGTAGCTTCTAGTCTTACCATTGGGGTGCTATTAAGTCTTCTGGCTAAGAAATCTGACTAGCTTAGATTGAGCTCTGTATGATTGCCTATATTATTTTACTAAGCAATCAAATTCCCCTTTCTTTTTTTTTTGGTCATATCAAATTCCCCTTTCAACCCCCCTTTTATTCATTTACTGGTCCATGATGTTGATCCATACAAAGTATGGATCTTCTATCTATTTTTGTTTTAGGAAAACAACCCCCCCCTCCCAATGACCATGTGTCAATATCAAGAATTATTTTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00976	82245	92996	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000976s00028356.1	PF03741.11	TerC	220	404	1.90E-41
Glyur000976s00028356.2	PF03741.11	TerC	180	364	1.50E-41
Glyur000976s00028356.3	PF03741.11	TerC	141	325	1.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.220
SRR1783600	control	1.096
SRR1783602	moderate drought stress	1.085
SRR1811619	moderate drought stress	0.987

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.976
DRR006520	Root Summer glycyrrhizin high producing strain	1.795
DRR006521	Root Winter glycyrrhizin high producing strain	1.611
DRR006522	Root Winter glycyrrhizin high producing strain	1.262
DRR006523	Root Summer glycyrrhizin low producing strain	1.546
DRR006524	Root Summer glycyrrhizin low producing strain	1.337
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.803

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.080
SRR2868004	Drought Stress (root)	1.759
SRR2967015	Control (root)	1.937

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.926
SRR9715740	Leaf	16.525
SRR9715741	Leaf	10.003
SRR9715739	Root	1.074
SRR9715742	Root	0.896
SRR9715743	Root	1.224

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.827
SRR8749028	MeJA induced 9h	1.627
SRR8749029	MeJA induced 9h	1.254
SRR8749030	Uninduced	1.826
SRR8749031	Uninduced	0.663
SRR8749032	Uninduced	0.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.859
SRR8400027	Control - Root	2.849