Gene detail information of Glyur000976s00028347 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37310.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004497438.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Cicer arietinum] |
| Swissprot | tr|Q9ZUT5|PP191_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g37310 |
| trEMBL | tr|A0A072VLN0|A0A072VLN0_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH42318.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00976 | 31910 | 33868 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000976s00028347.1 | PF01535.15 | PPR | 89 | 114 | 0.18 |
| Glyur000976s00028347.1 | PF12854.2 | PPR_1 | 153 | 185 | 1.20E-05 |
| Glyur000976s00028347.1 | PF13041.1 | PPR_2 | 189 | 238 | 5.60E-09 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 266 | 292 | 7.50E-05 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 295 | 321 | 0.00033 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 326 | 352 | 0.0002 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 400 | 425 | 0.089 |
| Glyur000976s00028347.1 | PF13041.1 | PPR_2 | 428 | 473 | 2.20E-09 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 501 | 524 | 0.22 |
| Glyur000976s00028347.1 | PF01535.15 | PPR | 567 | 594 | 0.0036 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.273 |
| SRR1783600 | control | 4.461 |
| SRR1783602 | moderate drought stress | 2.878 |
| SRR1811619 | moderate drought stress | 2.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.220 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.249 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.990 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.216 |
| SRR2868004 | Drought Stress (root) | 4.356 |
| SRR2967015 | Control (root) | 4.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.267 |
| SRR9715740 | Leaf | 2.030 |
| SRR9715741 | Leaf | 2.455 |
| SRR9715739 | Root | 5.179 |
| SRR9715742 | Root | 6.723 |
| SRR9715743 | Root | 7.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.921 |
| SRR8749028 | MeJA induced 9h | 8.039 |
| SRR8749029 | MeJA induced 9h | 4.267 |
| SRR8749030 | Uninduced | 1.839 |
| SRR8749031 | Uninduced | 1.636 |
| SRR8749032 | Uninduced | 0.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.681 |
| SRR8400027 | Control - Root | 5.078 |