Gene detail information of Glyur000976s00028342 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02710.1 | 5.00E-49 | |
| NR | XP_007144496.1 | 1.11E-89 | hypothetical protein PHAVU_007G161000g [Phaseolus vulgaris] |
| COG | NP_489169.1 | 2.00E-31 | hypothetical protein alr5129 [Nostoc sp. PCC 7120] |
| trEMBL | tr|V7BFY2|V7BFY2_PHAVU | 4.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:ESW16490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00976 | 5922 | 9168 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000976s00028342.1 | PF03692.10 | CxxCxxCC | 78 | 167 | 4.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.709 |
| SRR1783600 | control | 1.771 |
| SRR1783602 | moderate drought stress | 3.697 |
| SRR1811619 | moderate drought stress | 3.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.154 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.613 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.142 |
| SRR2868004 | Drought Stress (root) | 1.729 |
| SRR2967015 | Control (root) | 4.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.635 |
| SRR9715740 | Leaf | 33.477 |
| SRR9715741 | Leaf | 19.540 |
| SRR9715739 | Root | 2.103 |
| SRR9715742 | Root | 2.452 |
| SRR9715743 | Root | 3.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.940 |
| SRR8749028 | MeJA induced 9h | 2.361 |
| SRR8749029 | MeJA induced 9h | 2.406 |
| SRR8749030 | Uninduced | 1.973 |
| SRR8749031 | Uninduced | 0.565 |
| SRR8749032 | Uninduced | 0.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.189 |
| SRR8400027 | Control - Root | 5.431 |