Gene detail information of Glyur000975s00029572 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37280.1 | 2.00E-106 | MRG family protein |
| NR | XP_003524665.1 | 0 | PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max] |
| trEMBL | tr|I1K283|I1K283_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G21320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00975 | 65190 | 71250 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000975s00029572.1 | PF05712.8 | MRG | 163 | 333 | 2.00E-53 |
| Glyur000975s00029572.2 | PF11717.3 | Tudor-knot | 34 | 67 | 4.80E-10 |
| Glyur000975s00029572.2 | PF05712.8 | MRG | 117 | 287 | 1.20E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.464 |
| SRR1783600 | control | 4.393 |
| SRR1783602 | moderate drought stress | 4.675 |
| SRR1811619 | moderate drought stress | 4.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.426 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.604 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.880 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.977 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.476 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.980 |
| SRR2868004 | Drought Stress (root) | 11.072 |
| SRR2967015 | Control (root) | 10.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.963 |
| SRR9715740 | Leaf | 8.193 |
| SRR9715741 | Leaf | 6.084 |
| SRR9715739 | Root | 1.412 |
| SRR9715742 | Root | 2.089 |
| SRR9715743 | Root | 2.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.597 |
| SRR8749028 | MeJA induced 9h | 18.765 |
| SRR8749029 | MeJA induced 9h | 24.918 |
| SRR8749030 | Uninduced | 19.154 |
| SRR8749031 | Uninduced | 12.814 |
| SRR8749032 | Uninduced | 15.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.457 |
| SRR8400027 | Control - Root | 13.990 |