Gene detail

Gene detail information of Glyur000975s00029571

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37270.1	0	heavy metal atpase 1
NR	XP_004509102.1	0	PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [Cicer arietinum]
COG	YP_004651407.1	2.00E-99	cadmium/zinc-transporting ATPase HMA1 [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|Q9M3H5\|HMA1_ARATH	0	Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (Precursor)
trEMBL	tr\|K7MM17\|K7MM17_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G18250.2}

Sequence

Transcript Sequence

>Glyur000975s00029571.1
ATTTATTTTTCGCTCTATACTCTGTTGTAGTGACCCAGAAAGAAGGAGCAGAACGGAACCAGAAATAACCACTGCAAATAGACTCTGATTCTCTCTCACTTCAACGACGAATGGCCTGAAGCTCACCTTCGAGGTTCCAATCTCAAGATGGAAGCAGTTTCATATTCAATTCCCTCTACCAAACTCCAATCACTTCATATTTACACCAGAGCCACAAGAATTCGATCCTCCAAGTTCACTCTTCGGCTTCGCCCCCCCTCAATTTCAATCAAACCTTACTATTCTTCCAAATTACTCATCCTCCATCACCACAGGCTTCGTTGCGTCGCTGAATCCACCACTAACCACCACGACCATCACCACCACCACCACCACAATCACAGCGATCGGCACCGGCACGACCACCACCACCACTCNCACGGCATCGATAGTGCTAATCTCACAGGGCCTCAAAGAGCGATNATCGGTTTCGCCAAAGCCACGAGATGGATGGACTTGGCAGATATCCTGAGGGAGCACTTGCACCTGTGCTGCTTCTCTACCGCTCTATTTGTTGCCGCCGCCATTTGCCCTCACACCTTGCCCAAACACCTCATCAAGCCCTTTCAGAAATCTCTCATCTCCATCGCCTTTCCTTTGGTTGGGGTTTCTGCGTCACTTGATGCTCTTATTGAAATTAGTAGTGGAAAAGTGAACATCCATGTATTAATGGCAATGGCAGCCTTTGCATCAATATTCATGGGAAACTCTTTGGAAGGAGGGTTACTTCTTGCCATGTTCAATCTGGCACATATAGCCGAAGAGTACTTCACCGGCCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAAAACAATCCGGATTTTGCACTTGTTCTGGATACAAAAGATGATAAACTTCCTAATACATTTGACTTGGTGTACAGGAGGGTTCCTGTGCATGATATAACTGTAGGATCATATGTCCTGGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAACTTTTCCAAGGCAGTGCCACAATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAATTCCTGGCGGTGCAAGGAACTTAGATGGGAGAATAATTGTGAAGGTAACAAAGNCATGGAAGGAATCAACTCTCAGCAGAATTGTGCAGTTGACTGAAGAAGCACAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGCGAACGTTACAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTGTTGGGCCACTTGTATTTAAGTGGCCATTCATCAGTACATCAGCTTGCAGGGGTTCAATTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCACCATGTGCCTTGGCTGTGGCACCATTGGCATATGCTACAGCAATCAGCTCTTGTGCAAAAAAGGGGATATTACTCAAAGGTGGACATGTTCTGGATGCTCTAGCTTCATGTCATACTATTGCCTTTGACAAAACAGGGACATTGACAACTGGCGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACATTAGAAATAAGGAATCAAACATTTCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCACTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTCGACCATAGTGAAGGCAAAGACCTCCCTTCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGCAGAGGCCTTACCGCCACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAAACTATTGAATGCATCACTTGGGTCTGTAGATTTCATCACTTCATTTTGTCAATCCGAAGATGAATCAAAAAAGATCAAGGAAGCTGTTAATACATCTTCCTATGGCAGTGAATATGTTCAAGCTGCCCTTTCAGTTAATAAGAAGGTAACATTGATTCACCTGGAGGATAGNCCTCGTCCAGGGGTTTTTGATGTTATTCAAGAACTGCAAAATGAAGCGAAGCTTCACGTGATGATGTTAACTGGTGATCACGAATCTAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATACAGGTGAGTTCCTGACACTATTGATTCCTTTCCGATATAAGTTCCATGCAGCATGCCCTCCCACTTCTTTTATTGTACCTTTGTTGACCAATGCTGCAAATCTGTTGTCTTATCTCTATGATGAGACTATTTTTTCAACCAGCTCCTACTTCGTATTAACTAAATTGAATGATATCTTTTACACACACAGTTGTTCTCTATGCAATTTTGTTTTTACTTCTGTAACAGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTTATCGTGCTAGTGCAACTGCCATTGCTGTTGCAGATGTGTTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGCATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAGCAAAATGTGGCTCTGGCATTGTTTTGCATTGTTATGGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACACTGCTTGTTTGTCTCAATTCCATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATATATTACAGTTGATTGGCGAGGTTAAATCTAGACTAGTGTCTCTCAGGACAAATATCACGGGCTCAAGCAGCATTACAACGGCGAATGTGACGTAGTGTTGTTTGTTGNAGTGTATTGCACATTTATATTGTGTTTATTGAGAAAAATGTCACTACCTTGTATATCTGTAGGCTTCTTTTTCATCCCATAATATCTAACATTCCCGATTATTTGAGGGGCTTGCTTCCCTTTATTTACCCCTCGTTTTGCCATTGAAGTGGAATAATGAAAATGGAAAATATTAAGGGAAGAAGAATATGCAGCCACATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00975	55859	64378	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006812 cation transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0019829 cation-transporting ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000975s00029571.1	PF00122.15	E1-E2_ATPase	207	441	1.00E-40
Glyur000975s00029571.1	PF00702.21	Hydrolase	447	669	2.80E-26
Glyur000975s00029571.2	PF00122.15	E1-E2_ATPase	207	441	8.80E-41
Glyur000975s00029571.2	PF00702.21	Hydrolase	447	693	2.10E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.049
SRR1783600	control	22.111
SRR1783602	moderate drought stress	20.826
SRR1811619	moderate drought stress	20.494

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.608
DRR006520	Root Summer glycyrrhizin high producing strain	20.990
DRR006521	Root Winter glycyrrhizin high producing strain	7.831
DRR006522	Root Winter glycyrrhizin high producing strain	7.675
DRR006523	Root Summer glycyrrhizin low producing strain	16.775
DRR006524	Root Summer glycyrrhizin low producing strain	16.227
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.455

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.620
SRR2868004	Drought Stress (root)	26.637
SRR2967015	Control (root)	21.113

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.593
SRR9715740	Leaf	28.539
SRR9715741	Leaf	32.943
SRR9715739	Root	9.563
SRR9715742	Root	20.301
SRR9715743	Root	17.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.194
SRR8749028	MeJA induced 9h	9.979
SRR8749029	MeJA induced 9h	5.301
SRR8749030	Uninduced	5.300
SRR8749031	Uninduced	2.927
SRR8749032	Uninduced	3.379

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.909
SRR8400027	Control - Root	25.110