Gene detail

Gene detail information of Glyur000975s00029566.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37250.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004509103.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250-like [Cicer arietinum]
COG	YP_004775215.1	7.00E-22	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGS3\|Y4372_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (Precursor)
trEMBL	tr\|A0A072UNT7\|A0A072UNT7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH31489.1}

Sequence

Transcript Sequence

>Glyur000975s00029566.1
AGAGTTGCAAAATCTTCCAACTCCACCTGCGTGTCTAGTAGTAGTAGAAAAAGATGCTATACATTAGTCGCCTAACTTTACAAGTATTATAGAGATCATAGAGTACTAGGAAGTGAGAGAAGAGAACAAAGCTGCGCCTCTGAGGAAGCAATTAAATTAACAATTTAGAGCTCAACCATAAATTATATTTATAGTAGTAGCAGCGTAGCGGCACTGCAAAGCACAGAGGAGCATATTTGTTTTAAGGAACCCGGTTTGGGTTTTGGTGAGCTGTTCATCATGTCTTCCTCGCCCTCCTGTAACCTTTTTAATCCCTCACTCATATATTGTTTTTTTCACTCACACTAACTAATATTCCATCCACATGGCCCTCTGTCCATCGCAATAAATCCCCATTAACCTCACTCCCTCTCTCTCTCTCCGTTCTTCTTGCTTGTGCTTGGAGAAATGTGGTTAATCACTGCGTGAAATGAAATCATGAACTACAGTACAGCCCTTGGTCTCCGTTCACGGTGGAGGGTAATTCTCTTCTTGCTCCTGCTTCTGGTAATTACTTTTAACCAATGCCATGGCCTGAGTAGGGACGGTGTTCTGTTACTTTCCTTCAAGTACGCCGTGCTCAACGACCCTCTCTATGTTCTTGCAAATTGGAACTACAGCGACGACACACCCTGTTCGTGGAACGGCGTCGTTTGTTCCACCACGGTACCAGGTTCTGCAACAACAACAACAACAAATGCTACTGCAACCCAAAATCGCGTGACTTCCTTGTCCCTACCAAATTCTCAGCTTCTGGGTTCCCTTCCTTCCGATCTGGGTTCCATTGAACACCTCCAAATTCTCGACCTTTCCAACAATTCCCTCAACGGGTCTCTTCCTTCTTCGCTTTTCAAACCCTCCTCTGAGCTTCGGTTCCTCAACTTATCAAACAACTTGATAACAGGGGAGGTTCCAGAGTCCCTAACACAGCTTAAGAATCTTCAGTTTCTCAACCTCTCCGACAATGCCTTGGTTGGTAAAGTCCCCAACAATCTCTCCAACATGCAAAACCTAACCGTCGCTTCCCTCAAGAACAATTACCTCTCTGGCTTTCTCCCCGGCGGGGTGAGAACCCTGCAGGTTTTGGATCTGTCTTCGAACCTGTTGAACGGGACTCTGCCACCGGATTTCGGTGGTGACGCCATGCGTTACCTGAACGTCTCCTACAACAGATTTTCCGGCAAAATCCCACCGGAGTTCGCCGGGAAATTCCCAAGTAACGCCACGGTTGACCTCTCGTTCAACAACCTCACCGGCGAGATTCCGGGTTCCCCTGTCTTGTTGAACCAGCAGAGCAAGTCTTTCTCAGGGAATGCTGATCTTTGCGGAGAGCCAACCAAGAATCCATGTTCCATTCGTTCTTCGCCGTCTTCTGAACCCAAAGGGTCCTCTCCTACGTCACCTCCTGCAATCGCTGCGATTCCTAAGACGTTTGATGATTCCCCTCCCCTGGCGCCAACAGGGTCGAAACAGAGTGGCCTTCGAGGAGGAACCATTATAGGAATCGTGGTGGGGGATATAGTGGGAATTGGAATCTTAGCCACGGTTTTCGTGTACATGTACCGGTTGAAAAGAAAGAAGGACATGGAGAATGCAATAAAGAACGAAGCAGCTGCTGCAAGGAGCGAGAGCTCTTCGTCAACGTCAGAGTCAAGAGGGTTCACGAGGTGGTCGTGCTTGCGCAANAGAGCGGAAGAGGAACAGTCCTCGGAGACACCGAGTTCTTCCGACAGCGAGGGAGAACCGGCAAGGGAAGGTGGTGGTGTTGAGAATCAGAAGCAACAAGAGAACAAAACGGGTACACTTGTGACGGTTGACGGTGAGAGAGAGCTTGAGCTTGAGACGCTGTTGAAGTCGTCGGCGTACATATTGGGTGCCACTGGTTCCAGCATAATGTACAAGGCGGTGCTTGAAGATGGGACGTCGTTGGCGGTTCGGAGAATCGGTGAAGGTGGCATGGAGAGGTCGAATATGAAGGACTTCGAGAGTCAGGTTCGGGTCATAGCTAAACTGGTTCACCCAAATCTGGTTCGGGTTCGTGGTTTCTACTGGGGACACGACGAGAAGCTCATCATCTATGACTTCGTCCCAAATGGATGCCTCGCCAACGTTCGCTACAGGAAGGTGGGCTCCTCGCCTAGCCACTTACCGTGGGAAGTCCGGCTCAAGATAGCGAAAGGGGTGGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCACGTGCATGGAAATTTGAAGCCGAGCAATATTCTATTGGGCAGCGACATGGAGCCCAAGATTGGAGACTTTGGGCTCGAGAAAATCGTAACTGGAGGCGACACCAGTTACAATAAGGNCGGAGGGTCCGCGCGTATTTTTGGGAGCAAGAGATCCACGGCTTCGCGAGATAGCTTCCAGGACGTTACATTTGGGCCTAGCCCAAGCCCAAGCCCAAGCTCGATAGGTGGCGTGTCACCTTACCACGCTCCCGAGTCGCTCAGGAACCTGAAGCCTCACCCGAAGTGGGACGTGTACTCTTTTGGGGTCATGTTCCTTGAATTGCTGACGGGGAAGGTTGTGGTCTTGGATGACATGGGCCAAGGGCCCGTGGTTTTGGTTGAGGAGGATAAGCAACGGGCCTTGCGGATGGTTGACGTGGCAATCCGTGCTGACATGGAAGGCAAGGAGGAGGCCCTGTTGGCCTACTTCAAGTTAGGGTACAGTTGTGTGTCTAGTGTTCCGCAGAAAAGGCCACCGATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCCCATCTACTTCTTCTTCCTCCTCTTCATCGTCGTTTTATTATAGCCACTAAACCATGATTTGCCATACTGGTTTTGTAGAGAGAAAAGAAGAAAAAAAAAATAGTGTACTTAATGATCCACTGATAGGTTTTTGTGTTTGGATTCCAGTGTTGTGTGTTGTAATTGTATCAGAAGTCCATTGACTATATCTCTGTCAAATCATTTACTAATTTCCAATTAGGAATAGATTCTAGTTGCGCGTAATTTCCCCCAAAACTTTGATTTTTTAAACTTTGATTTAACCAAAGGCAACAATATAATGGCCTTGACGATATCACGTACGAATATTGAGATGGCTATATATATGCTCAAACAAATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00975	9854	13529	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000975s00029566.1	PF08263.7	LRRNT_2	35	74	3.60E-10
Glyur000975s00029566.1	PF00560.28	LRR_1	118	139	0.013
Glyur000975s00029566.1	PF12799.2	LRR_4	143	177	1.60E-06
Glyur000975s00029566.1	PF00560.28	LRR_1	213	232	0.17
Glyur000975s00029566.1	PF00560.28	LRR_1	237	255	0.65
Glyur000975s00029566.1	PF00069.20	Pkinase	481	772	3.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.837
SRR1783600	control	43.063
SRR1783602	moderate drought stress	29.262
SRR1811619	moderate drought stress	29.272

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.588
DRR006520	Root Summer glycyrrhizin high producing strain	7.596
DRR006521	Root Winter glycyrrhizin high producing strain	0.455
DRR006522	Root Winter glycyrrhizin high producing strain	0.444
DRR006523	Root Summer glycyrrhizin low producing strain	11.231
DRR006524	Root Summer glycyrrhizin low producing strain	11.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.177
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.481
SRR2868004	Drought Stress (root)	25.688
SRR2967015	Control (root)	27.241

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.478
SRR9715740	Leaf	7.187
SRR9715741	Leaf	9.535
SRR9715739	Root	47.367
SRR9715742	Root	58.992
SRR9715743	Root	52.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.324
SRR8749028	MeJA induced 9h	10.037
SRR8749029	MeJA induced 9h	7.126
SRR8749030	Uninduced	6.896
SRR8749031	Uninduced	0.747
SRR8749032	Uninduced	0.725

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.735
SRR8400027	Control - Root	57.704