Gene detail information of Glyur000974s00028629 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02250.1 | 0 | Ribonuclease II/R family protein |
| NR | XP_004506585.1 | 0 | PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like [Cicer arietinum] |
| COG | YP_723259.1 | 1.00E-145 | exoribonuclease II [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q6NQJ6|RNR1_ARATH | 0 | Ribonuclease II, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|K7MSB1|K7MSB1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G25560.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00974 | 19650 | 40787 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000974s00028629.1 | PF00773.14 | RNB | 388 | 683 | 8.10E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.918 |
| SRR1783600 | control | 3.929 |
| SRR1783602 | moderate drought stress | 4.901 |
| SRR1811619 | moderate drought stress | 4.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.043 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.901 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.122 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.603 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.506 |
| SRR2868004 | Drought Stress (root) | 10.485 |
| SRR2967015 | Control (root) | 8.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.700 |
| SRR9715740 | Leaf | 9.556 |
| SRR9715741 | Leaf | 10.676 |
| SRR9715739 | Root | 2.688 |
| SRR9715742 | Root | 11.564 |
| SRR9715743 | Root | 9.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.578 |
| SRR8749028 | MeJA induced 9h | 6.028 |
| SRR8749029 | MeJA induced 9h | 2.710 |
| SRR8749030 | Uninduced | 1.481 |
| SRR8749031 | Uninduced | 0.784 |
| SRR8749032 | Uninduced | 0.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.933 |
| SRR8400027 | Control - Root | 7.638 |