Gene detail

Gene detail information of Glyur000974s00028627

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29050.1	6.00E-91	RHOMBOID-like 1
NR	XP_003520922.1	0	PREDICTED: inactive rhomboid protein 1-like [Glycine max]
COG	YP_004266084.1	2.00E-21	rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
trEMBL	tr\|I1JLP8\|I1JLP8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G13780.1}

Sequence

Transcript Sequence

>Glyur000974s00028627.1
CTCATGTTCAACAGGATTTTCTAAAATNAAATAAACAAATAGTGTCCCAACGGTGCAAGTAAGTAAAGTTGTTAAACTAAATCAAACCAAACCATAATCCCTTGGCTCCGTCCTCCTCTGACTCAAACTCCATGGGTCTCAGTCTCATCAAAATCAAATTACCCACTCTCTCACCATTCCAACAACAACAACAACATTAGTTTCTCTTTTGTCTGAATTTTCGCTCTCTCCGTTGTTGATTGTCACTGTCGGTGATCAATGGCTGGAGGAGAGCCACCTCCATTGGAGACCCATTCAAGGAGAAGCAGCAACAATAACAACAACAACAACAACGTGGTGCACCCAGTTTCAGTTTCAGTCACAGTCTCAGACCCACCACAAGCACAACCAGTTCAATACCAGTATTACAGGGAGGAAGAGGTGAAGCATCACAAGAAGTGGTTTCCATGGTTGATACCGTTCTTCGTTGTTGCCAACGTCGTCGTTTTCGTCGTCACCATGTATGTCAATAACTGCCCCCACAACTCCGTCTCTTGTATCGCTCGCTTTCTTGGTCGTTTCTCCTTTCAGCCTTTCAAAGAGAATCCCCTCCTTGGCCCTTCATCACTCACGCTACAGAAGATGGGGGCTCTTGATGTGAACAGAGTGGTTGACAGACACCAGGGTTGGCGCCTCATCACTTGTATGTGGCTACATGGTGGGGTTTTCCATCTATTGGCAAACATGCTGGGCATTCTGTTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGTGCTTATTGGACTGCTATTTGTCATATCTGGATTTGGGGGCAGTTTGCTTTCTGCTCTTTTCATCCAGTCAAACATTTCTGTCGGTGCTTCTGGTGCACTTTTTGGGTTGCTAGGAGGCATGCTATCAGAACTCATCACCAATTGGACTATATATGATAACAAGTTGGCAGCACTTTTCACCCTTGTGATGATCATTGCGGTCAATCTCGCATTGGGGATTCTCCCACATGTGGACAATTTTGCTCATATTGGAGGCTTTCTTACAGGATTTCTTCTTGGATTTGTGTTTTTGATACGTCCTCAATTTGGATGGATGAACCAACGATATGCTCCNGTAGAATATTCTCCAACACGAGTTAAGCCTAAATTCAAGAAATATCAGTGCATATTATGGGTCCTCTCCCTGATCATTCTAATTTTCTGCCATGTTAAATTGTCTAATATGACAGGCTTTCTGTTGGACTGGTTGCACTTCTCCGTGGCGTTGATGCGAATGACCACTGCTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAATGGAGCTGCCATACAGAGGCAGCATATTTCAAACCAGCTTGGCAACCAGCTGAATGTAACATGCTCAAGCAATGGAAAATCCAGTACATACTTAATGGAGGATCCAACTAGTTCCCAGATCCAGCAATTGTGTACTCAGCTTTGTAGTTGAGTTTTGACAAAAAGGGATGCCCGGTTAGAATGAGATGATGATCATTTGTTGATATTCATGTGTTTCAGGCTCTCANGAAACACCATAGTGCAATGTAGTTTATACCTTTTGCTTTATTCAGGAAACAGGATTAAAAAGAAAATTTTTGCCTTTGCAGATTTGTTGTTCTCCTTGTGTATATAATATATTGACNGATACCTATTTTGTGCTCAGGATCAAAGTTACACATACAAGTTATTCGTATTATAAAAAAGATAAGAACTGTGTCCAAATTGTTTTGATGTGGATACACTTGACTGGGTTACGATTCTNGTGTGAAGTTATAAGGTTGGAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00974	8902	14581	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000974s00028627.1	PF01694.17	Rhomboid	131	274	1.10E-46
Glyur000974s00028627.2	PF01694.17	Rhomboid	131	274	1.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.322
SRR1783600	control	15.660
SRR1783602	moderate drought stress	14.536
SRR1811619	moderate drought stress	14.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.710
DRR006520	Root Summer glycyrrhizin high producing strain	14.952
DRR006521	Root Winter glycyrrhizin high producing strain	23.162
DRR006522	Root Winter glycyrrhizin high producing strain	22.456
DRR006523	Root Summer glycyrrhizin low producing strain	16.661
DRR006524	Root Summer glycyrrhizin low producing strain	16.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.107
SRR2868004	Drought Stress (root)	33.762
SRR2967015	Control (root)	30.307

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.539
SRR9715740	Leaf	12.930
SRR9715741	Leaf	11.925
SRR9715739	Root	20.844
SRR9715742	Root	17.355
SRR9715743	Root	15.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.699
SRR8749028	MeJA induced 9h	31.922
SRR8749029	MeJA induced 9h	14.251
SRR8749030	Uninduced	37.892
SRR8749031	Uninduced	64.698
SRR8749032	Uninduced	22.293

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.566
SRR8400027	Control - Root	30.523