Gene detail

Gene detail information of Glyur000973s00026301

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01500.3	1.00E-66	carbonic anhydrase 1
NR	XP_007151036.1	1.69E-153	hypothetical protein PHAVU_004G013500g [Phaseolus vulgaris]
COG	YP_114108.1	3.00E-24	carbonic anhydrase [Methylococcus capsulatus str. Bath]
Swissprot	tr\|P17067\|CAHC_PEA	3.00E-137	Carbonic anhydrase, 25 kDa isoform (Precursor)
trEMBL	tr\|D2DWB7\|D2DWB7_PHAVU	6.00E-154	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}

Sequence

Transcript Sequence

>Glyur000973s00026301.1
CTCATCTAAAAAGATAGGGAATGAAGCTCTCCTTTGCTTGGCTTTCGTTTTCATTATCTACCTTATGGTCACATTAAAATGGGGGATACCCAATTAGCCATGCCATATGCCATTCCCTTCATAGTCACAAATTGCTATATAGCATACACATTTGAGTCCTCATTGCCACAATGTCGACCTCTTCCATAAACGGTTGGTGCCTCTCTTCCATTTCCCCTGCCAAAACCTCTCTCAAGAAAGCCACATTGCGACCCTCAGTCTTTGCCACGCTTAACACTCCTTCTTCTTCTTCTTCTTCAACCTCTTCCTCTTCTTTCCCTTCTCTCATCCAAGACAGGCCTGTCTTTGCTGCCCCTTCTCCNATCATCACCCCAACTTTGAGAGAAGATATGGGTAAGGGATATGAGGAAGCTATTGAAGAGCTCCAGAAATTGTTGAGGGAGAAGACTGAACTGAAAGCCACAGCAGCTGAAAAAGTAGAGCAGATAACAGCTCAGCTGGGAACACCATCATCATCTGATGGCATCCCATCATCAGAGGCCTCAGAGAGGATCAAATCTGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAGGCCTTTGTGGTCAGAAATGTTGCTAACATTGTTCCNCCATATGACCAGACAAAATACTCTGGANCTGGGGCTGCCATTGAGTATGCAGTTCTGCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGNGGTATTAAGGGGCTTTTGTCTTTCCCTTATGATGGAACCTACTCCACTGATTTTATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAAGCACAACATGGGGATGCACCCTTTGGAGAGCTATGCACNCACTGTGAGAAGGTATGAGACAAAATACAAGCTACCATTAGAACTCNTAAAGTTAACTTCTACATAGAGTCCTTTTGGATAAACTTCTCAACAAGCACAACAACAACAACCACAATCGAGCCTTATCCCACTAGGTGGAGTTAGTTACATGGATCACTCGACACCATAGTGGTTTGTTAACAGACTATAAGTACATATAGAAAAAAAAACAACTTAGGATGCCTATAAGTTTTTTAAACAATAGTTTCTCGTATAAATTGAAATTAGCTTCTACATTTCAATTTTTTTTCCAGAAGCTCTCTCANTTAACTTTTTTCATAAATACTGCAGGAAGCCGTGAATGTTTCCCTTGGGAACCTGCTAACCTACCCATTTGTGAGAGATGGCTTGGTGAACAAAACATTGGCACTGAAAGGAGGATACTATGACTTTGTTAAAGGATCTTTTGAGCTCTGGGGCCTTCACTTTGGCCTTGCTTCCTCTTTCTCCGTATGAACATCAAAACCATTATAATATCAATGAACCTCTCATGATCTTCACATCTTGGTTATTCTCCTCCTAAATATTCTNCTCCTCCTCCCTAAAATGTACCCTGTAAACTACCCTTGTTGTTATAATTATGATGAGAATAAATGTAGATGGAGATTCTCCATCACTCTCTCCAATATCTATTGCTCCAAAATTAAAAAAGTTCCTCTTTTTCTTGCAACAAAAGTTAGGAGCAACATGTGTAGTAATTTATGGTCTTTTTTTTTTACCTCTTCTTTGTTAGGTAAAAGATGTGGCCACGATTCTGCATTGGAAGCTATAGGGTCATGCTTAGAGGTCGTGTGTGTCTGCATTCTGCAATGAAGAGGCCTAGCTACCTTTCATCATATATATGATATTCATATCTATATTATATGAAACTATGAACTGAGTTTATGTTGGAAAATCTCCTCTTAAATAAGAGTTTGGAAATCCTCCTCTTGAGACAAAATTTTCNCTAGCTTCTTTCAACAATTCGTCNTTGTTCTTCATATACTAGCAACTAAACAAGATTATACAACAAATAATGAANGAGTTTAATAAGTAACTAGCGGATGGACTCATATATAAATTACGAGTCTTTTCCCAACATAAACGGTAAATAAAATCTAACAAATGAAACAATTTTGGTGGNAAATAAATAAAAAAACGTAACACATGTCCCAGCTTGAGAGGTGANATGTGTCGTAGCGAAGACATATCTTGTATAGTAATTGATTGATAACTAGACCTTGACACATCATAAGATTACTANTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00973	66983	71372	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01673	cynT, can	EC:4.2.1.1	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0015976 carbon utilization

molecular_function

GO:0004089 carbonate dehydratase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000973s00026301.1	PF00484.14	Pro_CA	130	232	1.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.050
SRR1783602	moderate drought stress	0.032
SRR1811619	moderate drought stress	0.033

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.571
DRR006520	Root Summer glycyrrhizin high producing strain	0.536
DRR006521	Root Winter glycyrrhizin high producing strain	0.550
DRR006522	Root Winter glycyrrhizin high producing strain	0.538
DRR006523	Root Summer glycyrrhizin low producing strain	0.219
DRR006524	Root Summer glycyrrhizin low producing strain	0.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	2102.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	2054.421

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.346
SRR2868004	Drought Stress (root)	5.056
SRR2967015	Control (root)	1.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1116.699
SRR9715740	Leaf	1209.195
SRR9715741	Leaf	490.555
SRR9715739	Root	0.471
SRR9715742	Root	0.746
SRR9715743	Root	0.435

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.002
SRR8400027	Control - Root	0.015