Gene detail

Gene detail information of Glyur000973s00026300

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27925.1	7.00E-155	DegP protease 1
NR	XP_003618288.1	0	Serine-type peptidase [Medicago truncatula]
COG	YP_004446002.1	5.00E-109	peptidase S1 and S6 chymotrypsin/Hap [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|O22609\|DEGP1_ARATH	0	Protease Do-like 1, chloroplastic (Precursor)
trEMBL	tr\|G7KIR6\|G7KIR6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43894.1}

Sequence

Transcript Sequence

>Glyur000973s00026300.1
AGCATACACAGACAACATCCTTAGTCCACCCAAAAAACACAATGGCTACTNCATGTTCTTCACTCATTTCCACACTCTTCCGTTCCTCTTCCTCCTCATTCCCTCGCTCTCCAAACACCAAACCCACTCTCCACCTCTCCAAATCCCTCCACAATCATCACACACACACCCACCTCATTTCCCACCCTACCCTCTTCCTCCTTCGCCCTCCCAAAACCCCACAAACTCCAACAACTCCAACAACAACAACCCTTCTTCCCAAACTCACCATTCCCAAAACCTTCTTTGATTCCCTTCTCCTTCTCTGCACTTCTCTGGCACTCTCTTTCACCCTCTTCATCTCCACTGNTGACTCAGCTTCTGCCTTCGTTGTCACCTCCCCGAGGAAGTTGCAGTCCGATGAACTCGCCACCGTTCGTCTCTTCCAAGAGAACACCCCATCTGTTGTCTACATAACCAACCTTGCCGTCAAGCAGGATGCGTTTACTTTGGATGTTTTGGAGGTGCCACAAGGATCTGGGTCAGGATTTGTTTGGGATAAGGAAGGTCATGTTGTGACCAATTATCATGTTATCCGTGGTGCTTCTGATCTCAGGGTCACTCTTGCTGACCAGTCAACTTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCCGTGTTGNGTGTTGATGCGCCTAAAGACAAGCTCAGGCCTATACCTGTCGGGATCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTATGCTATTGGGAACCCGTTTGGACTTGACCACACTCTTACAACTGGTGTCATCAGTGGACTTCGGCGAGAAATTAGTTCCGCTGCAACCGGTCGTCCAATTCAAGATGTTATACAGACTGATGCAGCAATTAATCCCGGTAACAGTGGAGGGCCACTCCTTGATAGTTCTGGAAACCTCATTGGTATAAATACAGCTATATACTCCCCATCCGGTGCATCCTCTGGGGTCGGATTTTCTATTCCAGTAGATACTGTAAATGGCATTGTTGACCAATTGGTGAAGTTTGGNAAGGTTACAAGACCTATTTTAGGGATCAAGTTTGCTCCGGATCAATCCGTGGAGCAGTTGGGGGGCTTGCTACCAACAAAGCGTGATTCCTATGGTAGACTAATTTTAGGTGACATTATAACTTCTGTGAATGGTAAGAAAGTTACCAATGGAAGTGATTTGTACAGAATTCTTGACCAGTGCAAAGTGGGCGACAAGGTATGGCGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00973	61719	65240	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004252 serine-type endopeptidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000973s00026300.1	PF13365.1	Trypsin_2	160	299	6.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.153
SRR1783600	control	17.978
SRR1783602	moderate drought stress	12.411
SRR1811619	moderate drought stress	12.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.065
DRR006520	Root Summer glycyrrhizin high producing strain	14.162
DRR006521	Root Winter glycyrrhizin high producing strain	6.125
DRR006522	Root Winter glycyrrhizin high producing strain	5.974
DRR006523	Root Summer glycyrrhizin low producing strain	11.794
DRR006524	Root Summer glycyrrhizin low producing strain	11.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	110.841
DRR006526	Leaf Summer glycyrrhizin high producing strain	108.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.656
SRR2868004	Drought Stress (root)	25.569
SRR2967015	Control (root)	21.310

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.075
SRR9715740	Leaf	73.479
SRR9715741	Leaf	56.372
SRR9715739	Root	15.314
SRR9715742	Root	8.577
SRR9715743	Root	9.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.707
SRR8749028	MeJA induced 9h	9.890
SRR8749029	MeJA induced 9h	4.345
SRR8749030	Uninduced	2.049
SRR8749031	Uninduced	1.034
SRR8749032	Uninduced	0.752

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.593
SRR8400027	Control - Root	25.379