Gene detail information of Glyur000973s00026295 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27960.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN27426.1 | 0 | Nephrocystin-3 [Glycine soja] |
| COG | YP_004385194.1 | 5.00E-31 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| trEMBL | tr|I1K1F7|I1K1F7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00973 | 36739 | 41535 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000973s00026295.1 | PF13176.1 | TPR_7 | 249 | 272 | 0.024 |
| Glyur000973s00026295.1 | PF13181.1 | TPR_8 | 289 | 315 | 0.13 |
| Glyur000973s00026295.1 | PF13181.1 | TPR_8 | 374 | 393 | 0.25 |
| Glyur000973s00026295.1 | PF13424.1 | TPR_12 | 408 | 483 | 2.50E-13 |
| Glyur000973s00026295.1 | PF00515.23 | TPR_1 | 503 | 528 | 0.047 |
| Glyur000973s00026295.1 | PF13424.1 | TPR_12 | 582 | 654 | 7.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.850 |
| SRR1783600 | control | 2.740 |
| SRR1783602 | moderate drought stress | 2.331 |
| SRR1811619 | moderate drought stress | 2.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.631 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.720 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.559 |
| SRR2868004 | Drought Stress (root) | 15.324 |
| SRR2967015 | Control (root) | 14.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.127 |
| SRR9715740 | Leaf | 1.506 |
| SRR9715741 | Leaf | 2.802 |
| SRR9715739 | Root | 2.087 |
| SRR9715742 | Root | 8.239 |
| SRR9715743 | Root | 7.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.776 |
| SRR8749028 | MeJA induced 9h | 1.962 |
| SRR8749029 | MeJA induced 9h | 1.329 |
| SRR8749030 | Uninduced | 0.902 |
| SRR8749031 | Uninduced | 0.648 |
| SRR8749032 | Uninduced | 0.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.435 |
| SRR8400027 | Control - Root | 13.393 |