Gene detail

Gene detail information of Glyur000972s00027769.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39720.1	4.00E-66	RING-H2 finger C2A
NR	XP_007163425.1	0	hypothetical protein PHAVU_001G233700g [Phaseolus vulgaris]
Swissprot	tr\|P0CH30\|RING1_GOSHI	2.00E-38	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|V7CZ69\|V7CZ69_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35419.1}

Sequence

Transcript Sequence

>Glyur000972s00027769.1
ATGATGTCTTCAGGGACATCCTCGTATTGGTGCTACAGGTGCAGCCGGTTCGTGAGAGTCGGTAGACGCGGCGACACGGTGGTTTGTCCAGATTGCGACGGCGGGTTCATCGAGGAGATCGAGCAAACGGCGGCGGCACGCTCCGTCCACGTGGACGCCCGGCGTCGGCGGTTTCCGGCGGCGGCGATGTACATGATCGGCCAACGCCCAAGTCCCGACCAGTCTTCCCGCCCAGCCGCACTCCGTCGAACCCGCCGCAATGGCGGTGANCGGTCACCCTTCAACCCGGTAATCGTCCTCCGCGGCGGTGGAGGAGGGTCGGNGGAGGAAGGAACCGAACGAGAGAGTCGCGGGTTCGAGCTTTTCTACGACGACGGTGCCGGTTCTGGTCTCAGGCCTTTGCCTCCTAGCATGTCGGAGTTTCTCCTCGGATCCGGTTTTGATAGGTTGTTGGAACAGCTTTCCCAAATTGAGATCAACGGTATTGGGAGATACGAGCACCCACCAGCATCAAAAGCAGCAATCGATTCATTACCCACGATCTCAATCGATGAGGTTCATTTGGAAATGGAATCACACTGTGCAGTTTGTAAGGAACCTTTTGAATTAGGAACCTCGGTGAGGGAAATGCCTTGTAAGCACATATACCATCCAGAATGCATATTACCATGGCTTGCACTTCATAACTCTTGCCCCGTTTGTCGCCACGAGTTGCCTTCTGCTGCTGAAGATGCCGAGGCTGCAGCTGCTGCTGCAAATCCGAATCCACCACCGGCGCCGCAAGCCGGGTTGAATTCCCTTAATGAGGAGGAGAATAATGTGGGGTTGACGATTTGGCGGCTACCGGGTGGTGGATTTGCTGTTGGGAGATTCTCTGGTGGGAGAAGAGGTGCTGAGAGGGAGCTACCTGTTGTTTACACTGAAATGGATGGTGGGTTTAATAATGGGGGTGGTGAGCCTAGGAGGATTTCTTGGTCTTCAAGGGGGAATAGAGGGAGGGANAGGGGTGGTGTTGGTGGTGGTTTGAGTAGGTTGTTTCGAAACTTGTTTGGTTGCTTCAGAGGTGGAGTTGGATCTCAGCGTTCTAGTTATACTTTAAGGGCATCTAGTTCGTCTCGTTCGAGTATGGATCCTTCTCCGCGTTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00972	80036	81229	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000972s00027769.1	PF14369.1	zf-RING_3	7	40	5.20E-16
Glyur000972s00027769.1	PF13639.1	zf-RING_2	193	235	3.50E-13
Glyur000972s00027769.1	PF06547.7	DUF1117	274	376	1.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	85.884
SRR1783600	control	86.332
SRR1783602	moderate drought stress	67.078
SRR1811619	moderate drought stress	66.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	168.046
DRR006520	Root Summer glycyrrhizin high producing strain	167.050
DRR006521	Root Winter glycyrrhizin high producing strain	33.866
DRR006522	Root Winter glycyrrhizin high producing strain	36.726
DRR006523	Root Summer glycyrrhizin low producing strain	171.715
DRR006524	Root Summer glycyrrhizin low producing strain	163.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.003

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.899
SRR2868004	Drought Stress (root)	68.972
SRR2967015	Control (root)	77.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	137.953
SRR9715740	Leaf	122.533
SRR9715741	Leaf	149.356
SRR9715739	Root	349.009
SRR9715742	Root	266.436
SRR9715743	Root	284.845

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	148.751
SRR8749028	MeJA induced 9h	187.448
SRR8749029	MeJA induced 9h	157.131
SRR8749030	Uninduced	142.381
SRR8749031	Uninduced	122.681
SRR8749032	Uninduced	126.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.590
SRR8400027	Control - Root	86.626