Gene detail information of Glyur000972s00027765 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20520.1 | 4.00E-10 | RNA binding;RNA-directed DNA polymerases |
| NR | KFK31800.1 | 1.34E-10 | hypothetical protein AALP_AA6G160500 [Arabis alpina] |
| Swissprot | tr|Q9M9E1|AB40G_ARATH | 4.00E-09 | ABC transporter G family member 40 |
| trEMBL | tr|A0A087GPJ8|A0A087GPJ8_ARAAL | 5.00E-11 | Uncharacterized protein {ECO:0000313|EMBL:KFK31800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00972 | 62747 | 67601 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.441 |
| SRR1783600 | control | 1.636 |
| SRR1783602 | moderate drought stress | 2.460 |
| SRR1811619 | moderate drought stress | 2.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.141 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.306 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.336 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.879 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.834 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.377 |
| SRR2868004 | Drought Stress (root) | 1.929 |
| SRR2967015 | Control (root) | 2.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.682 |
| SRR9715740 | Leaf | 1.127 |
| SRR9715741 | Leaf | 2.212 |
| SRR9715739 | Root | 0.271 |
| SRR9715742 | Root | 1.290 |
| SRR9715743 | Root | 0.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.448 |
| SRR8749028 | MeJA induced 9h | 1.410 |
| SRR8749029 | MeJA induced 9h | 0.620 |
| SRR8749030 | Uninduced | 1.107 |
| SRR8749031 | Uninduced | 0.459 |
| SRR8749032 | Uninduced | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.715 |
| SRR8400027 | Control - Root | 4.754 |