Gene detail

Gene detail information of Glyur000972s00027760

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15530.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_007155476.1	0	hypothetical protein PHAVU_003G204500g [Phaseolus vulgaris]
COG	YP_001958461.1	7.00E-28	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9M9E0\|LRKS1_ARATH	0	L-type lectin-domain containing receptor kinase S.1 (Precursor)
trEMBL	tr\|V7CDV5\|V7CDV5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27470.1}

Sequence

Transcript Sequence

>Glyur000972s00027760.1
ATGGGTATGTCCCTGTTCCGGTTCCTGTTTCTCCTCTTCCTCTTCGTTCCCCCCATTTTCGCCCTGGACTTTGCGTTCAATTCCTTCACCGGCATCACCAACCTCACTCTGATCAACGATGCTCTCATCGAGGCCTCCGTAATCCGCATGACCAACGATTCCAACCAGTACTCATTTGGNCGAGCTTTCTACCCCAAAAAGGTCCCCATGATGAAACCCAACAGTTCCACCACCAATAATTCCTCATCAACCATCTCCTCCTTCTCCACTTCCTTCGTCTTCTCCGTCTTGCCGGAGATCCCCACAAGCCCCGGTTTCGGCCTCGCCTTCGTCCTCTGCAACACCACTTCCCCTCCCGGAGCACTCGCCAGCCAGTACTTTGGCCTCTTCACAAACGCCACCTCCCCCACCGTTTTCCCCCTCCTCGCCGTCGAATTCGACACCGGACAGAACCCGGAGTTCAACGACATAGACGACAACCACATCGGAATCGACCTCAACAACATCGAATCCGAACAACCAACCTCCGCAGGGTACTACAATTCCACCGGCGACTTCGTCCCCGTCCGAATGCGCAGCGGCGAAAACATTCGCGCGTGGATCGAATTCGACGGCGAGAATTTGGAGATAAACGTAACAGTCGCGCCGATCGGTGTTTCGCGCCCGTCTAAGCCTACGCTTTCTTATAGAGATCCAGACATGGCTAATTACGTGTCTCCCGATATGTACGTTGGCTTTTCGGCTTCGAAAACCAATTGGATCGAGGCGCAGAGAGTTCTGGCATGGAGCTTCAGCGATTCCGGGCCTGCCAGGGAATTAAACACGACGAACCTGCCGGTGTTCGAGCCGGAATCGCCATCGTCGTCCTCGCTTTCCGGTGGGGCAATTGCGGGGATTGTTATTGGCTGTTTCGCGTTCGCGGCGGTTTTAGGGTTTTACTTGTGGTGGCGAAAGAGCAGAGGGAAAGAAGAGGATGATGATGATGAGGTGGAAGATTGGGAGCTGGAGTATTGGCCCCACAGATTCACCTACGAGGAACTGAGATTGGCCACAGGGGATTTCCAGAAGGAGCAGCTCCTAGGTGTTGGAGGATTCGGAAGAGTGTACAAAGGGACACTACCGAATAAAACGCAGGTTGCGGTTAAGTGCGTTAGCCACGATTCCAAACAGGGGCTTAGGGAATTCATGGCGGAGATTTCTAGCATGGGGAGGCTCCAGCATAAGAACCTGGTACAAATGCGTGGTTGGTGCAGAAAGGGGAACGAGCTCATGCTGGTTTACGACTACATGCCAAACGGGAGCCTCAACAAGTGGGTCTTCGACAAACCCGAGAGGTCTATACGGTGGGAACAGCGCCGTCGTGTACTCGTCGACGTGGCAGAGGGTCTCAACTACCTCCACCACGGGTGGGACCAGGTAGTTATTCACAGGGACATCAAGTCCAGCAACATCTTGCTGGACGCCGAAATGCGTGGGAGGGTCGGGGACTTTGGTCTCGCGAAGCTGTACCAGCACGGAGAGGTTCCCAACACCACGCGCGTGGTGGGCACGCTCGGGTACTTGGCGCCGGAGATCGCGTCGGNTGCGGCGCCGACTTCGGCCAGCGACGTGTACAGTTACGGGGTGGTGCTATTGGAGGTGGCGTGTGGGCGGAGGCCGATTGAGACTTCCGTGGCGGAGGAGGAGGTGGTGCTCATTGATTGGGTGAGGGAGCTTTACGCGCAAGGGTGTGCTGTTGATGCTGCGGATCCTAGGATTAAGGGGGAGTACGATGTGGAGGATATGGAGATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGAGCCGCACAGGAGGCCCACCATGAAGGAAGTGGTTGCCTTGCTTCTTGGGGAGGACATCGCGGACGCGCCGGGAAAAGTGTTGTCTGATTTGACTCGCGGGGATGACGGCGACGGCGGGGAATCGGAAGAGGCGGCACCTTTGCAATCCATTAGTACTCGGATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00972	42626	44617	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000972s00027760.1	PF00139.14	Lectin_legB	22	265	5.70E-67
Glyur000972s00027760.1	PF00069.20	Pkinase	354	620	8.90E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.444
SRR1783600	control	9.359
SRR1783602	moderate drought stress	13.415
SRR1811619	moderate drought stress	13.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.560
DRR006520	Root Summer glycyrrhizin high producing strain	12.553
DRR006521	Root Winter glycyrrhizin high producing strain	7.887
DRR006522	Root Winter glycyrrhizin high producing strain	7.999
DRR006523	Root Summer glycyrrhizin low producing strain	27.217
DRR006524	Root Summer glycyrrhizin low producing strain	27.416
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.163
SRR2868004	Drought Stress (root)	28.406
SRR2967015	Control (root)	27.498

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.842
SRR9715740	Leaf	14.670
SRR9715741	Leaf	7.073
SRR9715739	Root	38.190
SRR9715742	Root	10.444
SRR9715743	Root	16.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.896
SRR8749028	MeJA induced 9h	5.819
SRR8749029	MeJA induced 9h	3.046
SRR8749030	Uninduced	4.518
SRR8749031	Uninduced	1.891
SRR8749032	Uninduced	1.854

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.590
SRR8400027	Control - Root	11.395