Gene detail

Gene detail information of Glyur000972s00027755

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63120.2	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004515873.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like isoform X1 [Cicer arietinum]
COG	YP_006409447.1	1.00E-93	DNA/RNA helicase [Alistipes finegoldii DSM 17242]
Swissprot	tr\|Q5N7W4\|RH30_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 30
trEMBL	tr\|V7CEX5\|V7CEX5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27466.1}

Sequence

Transcript Sequence

>Glyur000972s00027755.1
ATTGGCGCGTGGGATGGGCATTGAATTGTGGCGGTGGTGAGATATTTCTGATGCTACCGTACCGTAAAGAGCCGACTCTCCTCTTTTCGCAACAGTCAAAACAGCAAGTGGCAGCAAATATAGCGTGAGTGTCTGTAGAGAGCCAACACATCTGCGCCGTCGCTTCTAACTCCTCCACAATAAAATTCATCGCCATCCCCTCCCAAATTGGTCGTTTTCGGAAACCCTAGCATCTCATCTCACGACATGAACCCCTACGACAATAGATACTCCGATGCCGCTTCTTTTCGCGGCCGTCGCAGTGATCTAGTTGGATCTATGCCGCCGCCTGTTCTCGGCCGCGGCGGTCCGGTTCCCTACGGTGCTCCTTATGCCACCCCTAGACCCAACGGTTTCGGATCCGCACCTGCTACCCCGGTTCCGCACTTTGTGCCCCCTCCTGGGGGCTTTGCAGTAGGCCGAGGCGGTGGTTTTGGCTCTAGACTGGGCAATGGCCACGTGGCTGATAGAAAACATGATATAGTTCGTGGCGGTNGTGGTGGTGGAAGAGGTCGTGGTGGTGGTAGAGCCGGACCTCACGGTTTTAGAGGCTCCGGTAGAGGAGGCAGAAGCGCCGGGTTTGGAGGTAGACATGGTAGTAGTAGTGGATCTTCTAGGGATGACTTGAACAATGTTTCACTCCCGAAGCAGGACTTTAGGAATTTGGTCCCTTTCGAGAAGAACTTCTATGTTGAGAGCCCTTCGGTAAAGGCCATGACTGATCATCAAGTTATGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAATGATGTTCCGAGGCCTATTNGGGCTTTTCATGAGGCGAATTTTCCCGGTTACTGCCTTGAGGTCATTGCCAAATTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGATGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCCGGTAAGACTTTGGCGTATCTGCTTCCTGCTTTAGTGCATGTCAGTGCACAGCCTCGATTGGTACAAGGGGAAGGTCCTATTGTCTTAATTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTGTGAAATTTGGGATACGGGCAAATATTAGAAGTACTTGCATATATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGACCTTAAAAGAGGTGTTGAGATTGTTATTGCTACCCCGGGTCGTCTAATAGATATGCTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTCAGCCAGATTCGACCAGATAGGCAGACATTATATTGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTACTAATTGGGTCACCAGATCTGAAAGCAAATCATTCTATAAATCAAGTCATTGAAGTATTAACCGACATGGAGAAATACAATAGATTGATCAAGCTTCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACGAAAAAGGGATGTGACCAAGTGACAAGACAGTTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGACTGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGGTCAATTACGATTTTCCATCAAGCCTGGAAGACTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACCGCATACACCTTTTTTACCCATGCCAATGCCAAGTTTGCTAGGGATTTGATTAAGATCTTACAAGATGCTGGTCAGGCTGTGAGTCCTGCATTGTCTGCATTGTTTCGATCATCTGGTTCTGGTCAACTTGGATCTGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGCAATCGGGGTTCAATATCAGGATCCAATGCCATTCCTATAGGTATGAAGAGGCCTTGGCATTGTCTGTAGTTGGTGCTGCACTAGTCAATTTCTGAAGTTTTTAAAAAATAGTCACAAGACATTACTTTTGAAACAACACATTAATTGTTAGGTTTTAGGGAGAAAAACAATTGACCTTATAAACTATAGTGATTGAAGTGAACGAGGTATGTGTTGTAAATGATTGATGCATGTATGTAATGAGTTGGAGTTGGAGTGACCCACAGGGCCTCTACTAATTCCCGATTTGTTGGCTACTAGTTGGGTGTATTAGGTCAGGTAACCGAAGCGGGTTAGTACTATGGGTTAATATCATTCATCACAGTATGCAGGAAAGGTCCGTNTTTATCTGAATTGTACTGTGTTTACCTGTTTAGGATAAGTAGGGGTGAGGNAGGTTAAAACTTAATGTGACGACCACCAAATTTCAAGCATCGAAATATGCCAGAATGTCTACGAGGATTCATATTCAGTAGATTCTAACCCGACTAGGTTCATTTTTTGTTAAATTAATTAGCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00972	25491	30276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12823	DDX5, DBP2	EC:3.6.4.13	Spliceosome	map03040
			Transcriptional misregulation in cancers	map05202
			Proteoglycans in cancer	map05205

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000972s00027755.1	PF00270.24	DEAD	220	390	3.10E-44
Glyur000972s00027755.1	PF00271.26	Helicase_C	460	536	8.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.607
SRR1783600	control	20.699
SRR1783602	moderate drought stress	25.235
SRR1811619	moderate drought stress	24.872

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.808
DRR006520	Root Summer glycyrrhizin high producing strain	21.613
DRR006521	Root Winter glycyrrhizin high producing strain	107.149
DRR006522	Root Winter glycyrrhizin high producing strain	104.444
DRR006523	Root Summer glycyrrhizin low producing strain	29.872
DRR006524	Root Summer glycyrrhizin low producing strain	30.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.170

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.846
SRR2868004	Drought Stress (root)	32.102
SRR2967015	Control (root)	40.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.644
SRR9715740	Leaf	21.915
SRR9715741	Leaf	21.982
SRR9715739	Root	8.905
SRR9715742	Root	23.298
SRR9715743	Root	19.253

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.197
SRR8749028	MeJA induced 9h	29.736
SRR8749029	MeJA induced 9h	25.457
SRR8749030	Uninduced	27.370
SRR8749031	Uninduced	17.845
SRR8749032	Uninduced	22.414

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.886
SRR8400027	Control - Root	30.414