Gene detail information of Glyur000972s00027754


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70600.15.00E-67Ribosomal protein L18e/L15 superfamily protein
NRXP_004509672.19.25E-93PREDICTED: 60S ribosomal protein L27a-2-like [Cicer arietinum]
COGYP_005841940.11.00E-1350S ribosomal protein L15 [Fervidicoccus fontis Kam940]
Swissprottr|P49637|R27A3_ARATH5.00E-8560S ribosomal protein L27a-3
trEMBLtr|A0A067KGS0|A0A067KGS0_JATCU1.00E-91Uncharacterized protein {ECO:0000313|EMBL:KDP31039.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold009722389324339-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015934  large ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000972s00027754.1PF00828.14Ribosomal_L18e201469.10E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control733.872
SRR1783600control742.097
SRR1783602moderate drought stress673.323
SRR1811619moderate drought stress673.900

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain471.942
DRR006520Root Summer glycyrrhizin high producing strain471.600
DRR006521Root Winter glycyrrhizin high producing strain227.725
DRR006522Root Winter glycyrrhizin high producing strain218.982
DRR006523Root Summer glycyrrhizin low producing strain461.230
DRR006524Root Summer glycyrrhizin low producing strain462.684
DRR006525Leaf Summer glycyrrhizin high producing strain127.732
DRR006526Leaf Summer glycyrrhizin high producing strain126.953

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)494.066
SRR2868004Drought Stress (root)361.318
SRR2967015Control (root)336.417

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf220.455
SRR9715740Leaf181.043
SRR9715741Leaf185.429
SRR9715739Root870.020
SRR9715742Root433.188
SRR9715743Root506.122

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h297.618
SRR8749028MeJA induced 9h155.197
SRR8749029MeJA induced 9h244.421
SRR8749030Uninduced58.693
SRR8749031Uninduced24.955
SRR8749032Uninduced66.039

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root592.857
SRR8400027Control - Root546.726

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved