Gene detail

Gene detail information of Glyur000972s00027751

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26660.1	1.00E-66	myb domain protein 86
NR	XP_003525561.1	1.82E-178	PREDICTED: myb-related protein 330 [Glycine max]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	5.00E-80	Transcription factor MYB86
trEMBL	tr\|V7CB91\|V7CB91_PHAVU	1.00E-175	Uncharacterized protein {ECO:0000313\|EMBL:ESW27462.1}

Sequence

Transcript Sequence

>Glyur000972s00027751.1
ATCCTAAGTATGATTTGTGATTTAGCTCTCACCTCTCTTTAAATGAACACAATTAGTTTGAGTTACTCCCTCTCCACCCCACAACACATAACAACACTATTTTCTACCTCTTGAAACGTTTTTAAAAATGACACAAGCACTCTGGTAATATTTTCACGCTATATAGAGACAGTGACCACTTATTCCAGAGTTCATATAGTCTTCTTTCTTATTCCTCCAACATTAAGTAACATTGGCATTATTCCCACTGTGTCCTCACAAAAATGGGTCGCCATTCCTGTTGTGTGAAGCAAAAACTGAGGAAAGGGTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACCAGATTTGGTGTTGGGTGCTGGAGTTCTGTTCCCAAACAAGCTGGATTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCTCAGCAGGAAGAGGATCTTATAATGAGTCTTCATGAGGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTCTGGAATTCTTGTCTAAAGAAGAAGCTTATGAAGCAAGGGATTGACCCAACAACCCACAAGCCCCTCAGTACTGAAGCTGATCGTGTAAAGGAAGAGAAGAAAAGCACAGAGGCAACAACACCCTTGCAAATGCCATTGTCTTTGTCCCAAGAAGTGCCTTCAGCTACATCAACCTTATTAGCTTCATCATCACAGGGTACTTCTTCAGCATTTCTAATAAGCGATTCCAATTACTATGATAGCGGGGTCACATTGGACCCTTTGTCCTTCTGTGATTTCCAAATGGGTGTTATGCACTCTGCTTATAACTTACCACCAGTGAGTCACTGTCACACAAGCCAATTTGGACTGAATTCAAATTCAAGCTATGGATTCTGTTCAATGCCAGGCCTAACCAATTCGGATCATGGGAACGTGTCGGTGACCGAGTTTTCAGACAACAACTCTGGTTCTAATAAGATCAGCTCCTTGTTGTTCATGAATAATGATCATCAGGTGAAAGAGAGTTCCAGCAATAGCTCAAACATGAGCAGTGTTTATCAGATGAGAAGCGTGGTGGAAAATGCAGGGTTCTCTTGGGATGGTGGTGAGAACAAGTTGGACCCTTTGATTCAACAGTTCCAAGTCAATGCAATAAAATCAGAGGAATTCGGGACAAGTTCATGGGAAGAAGGGCAGCTGCAGACTCACAATTCAATAGATTTCACTAGCTATCCGTTAACGTCACTGTCAGAAGATCTAACGGGAGCAAATTTTGATGTTTTCCACCATATATGAACTGTAAATTCTTTCCTTTTTTTTTTAATTTTTATTATTATTTTTTTGAACTGTTTTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00972	10584	12265	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000972s00027751.1	PF00249.26	Myb_DNA-binding	14	61	5.20E-14
Glyur000972s00027751.1	PF00249.26	Myb_DNA-binding	67	110	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.577
SRR1783600	control	0.586
SRR1783602	moderate drought stress	0.279
SRR1811619	moderate drought stress	0.239

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.525
DRR006520	Root Summer glycyrrhizin high producing strain	1.577
DRR006521	Root Winter glycyrrhizin high producing strain	1.721
DRR006522	Root Winter glycyrrhizin high producing strain	1.677
DRR006523	Root Summer glycyrrhizin low producing strain	0.776
DRR006524	Root Summer glycyrrhizin low producing strain	0.776
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.109
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.557
SRR2868004	Drought Stress (root)	3.517
SRR2967015	Control (root)	2.298

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.036
SRR9715740	Leaf	0.476
SRR9715741	Leaf	0.498
SRR9715739	Root	0.274
SRR9715742	Root	0.576
SRR9715743	Root	0.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.567
SRR8749028	MeJA induced 9h	1.331
SRR8749029	MeJA induced 9h	0.540
SRR8749030	Uninduced	0.272
SRR8749031	Uninduced	0.161
SRR8749032	Uninduced	0.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.001
SRR8400027	Control - Root	2.783