Gene detail

Gene detail information of Glyur000971s00030741

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G20190.1	CLIP-associated protein
NR	KEH42416.1	CLIP-associated protein [Medicago truncatula]
Swissprot	tr\|Q8RWY6\|CLASP_ARATH	CLIP-associated protein
trEMBL	tr\|A0A072VLE8\|A0A072VLE8_MEDTR	CLIP-associated protein {ECO:0000313\|EMBL:KEH42416.1}

Sequence

Transcript Sequence

>Glyur000971s00030741.1
GCATAGTTTTNAAATCGTTTTCTTTTCTCCTCTGCTTCATTCACCATCTTCTTCTTCCCCATCGATTCCAACATTTCTACTTCTACTACATTCTATTTTCTAGTGCCACACTGCCACACCTCTCTCTCTCTCTCTCTCTCTCTCTCCTACCACAAAACTTCCCCTCTTAACTGTGAATTTAACGCCTCCGCTAAATTTAGCATCTCTTTCTCTCACCACACTCTCCCTTTCACTTCATCACTTCACTGTTCGTGTGCGTTTCCTCATTCGCATTNGCATTTGCATTTGCGGTTTCTCAGTGNGGTAACGGTTTCCATGCGGTGCTGAATCGGGGAACGGTTGGACCAGATCTGAACCCGGTTGCAGCAGATCCGAACAAAAAAAAATGGAGGAAGCGCTGGAGCTGGCGCGTGCAAAGGACGCGAAGGAGAGGATGGCGGGAGTGGAGCGACTCCACCAAGTTCTGGAAGCTTCTAGAAGGAGCCTAAGTTCCGTTGAGGTCACTTCCCTAGTCGATTGTTGCTTGGATCTCTTGAAGGACACTAGTTTTAGGGTCTCCCAGGGTGCGCTTCAAGCCCTTGCCTCCGCCGCCGTTCTCTCCGGCGAACANTTCAAGCTTCACTTCAACACGCTTGTTCCTTCCGTCGTTGATCGCTTAGGCGACGCCAAACANCCCGTTCGTGACGCCGCCAGAAGGCTCTTGCTCACTCTCATGGAGGTTTCATCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCATGGACATGCAAAAGCTGGAGAGTCAGAGAGGAGTTTGCACGAACTGTCACNTCTGCAATTGGTCTTTTTTCATCTACTGAACTTCCCCTTCAACGGGCTATTCTTCCTCCTATTTTGCAATTGCTGAGTGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGTGAAAGCTATTAATGCTAGGCTAGAGGGGATTCAACCAAAAGTTCAGTCTTCAAATGGTATTTCTAGTGGTTATATGGCTGGGGAAATTAATCCTGTGAATGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCATCANGGGAGAACTCTCTTTTTGGAGGAGAAGGTGATGTCACAGCCATAGACCCTATCAAGGTGTATTCAGAAAAGGAATTAATCAGAGAAGTTGAAAAGATTGCATCTACCCTTGTACCAGAAAAGGATTGGTCAATTCGCATNGCTGCCATGCAGAGAATTGAAGGTCTTGTTTTGGGAGGTGCTGTTGATTATCCGTGTTTCTTTGGACTCCTGAAGCAGCTTGTTGGACCTTTAAGCACACAATTGTCAGATCGAAGGTCTAGCATTGTGAAGCAGGCGTGCCATCTATTATGCTTTTTGTCAAAGGACCTCTTGGGTGATTTTGAAGCATGTGCTGAAGTGTTCATCCCAGTCCTTTTGAAGCTCGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGGTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCTAGGATAGCTGATTGTGCAAAAAACGATCGTAGTGCAATACTTCGTGCAAGGTGTTGTGATTATGCTCTCTTGATACTAGAACATTGGCCTGATGCACCAGAAATACAGCGATCGGCTGAGTTATATGAGGATATGATAAGGTGTTGTGTTTCAGATGCAATGAGCGAGGTGCGGTCAACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGTCGCCTGTTTTCATCCTTTGATCCTTCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGCAAACATAGGCGACATGCATCACCTTCCATTCGTGATAGAAGTGCGCTGATGTNATTAACTAGTCAAGCTTCTGCTCCATCTAATCTAACTGGTTATGGAACTTCTGCCATTGTTGCAATGGACAGAAGTTCAAGTTTGTCATCAGGGACTTCTATCTCCTCTGGTGTTCTTCTTTCACAAGCTAAGTCACTNGGTAAAGGTACAGAACGTAGTTTGGACAGTGTACTGCATGCAAGCAAACAGAAGGTCACTGCTATCGAAAGCATGCTTAGAGGTTTGGATTTGTATGATAAGCATAATTCATCTGCTCTCCGATCTTCAAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGTGATCCCCCATTCCCTGCTGCTGTTTCTGCATCTAATCGTCTGACTAGCTCTTTAACAATAGAATCAACTGCTCCAAGTGTTAATAAAGGTAATAACAGGAATGGTGGTTTAGGTTTGTCTGACATAATCACCCAAATCCAAGCTTCCAAGGATTCTGGCAAGTTANCGTATAATAGAAATGTTGGTATTGAGCCTTTATCAACTTTTTCATCATACGCAAGTAAAAGGGCTACTGATAAATTACAAGAAAGAAGTTCTGTTGATGAAAACAGTGACATCAGGGAGACTAGGCGATATNTGAACGCCAATATAGATAGGCAGTATACGGATACCCTTTATAAAGATAGCAACTTCAGGGATTCACATAATAGTTATGTGCCTAATTTCCAGAGGCCACTATTGAGAAAGAATGTAGCTGCACGTGTGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAGTCAATTATCTCTTGGAGAGATGTCAAATTTTGCAGATGGACCAGCATCTCTTCATGAAGCTCTTCATGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCCAGGGTTGCTGCCTTTAATTATCTTCACTCTCTATTGGAGCAAGGTCAAAAGGGAATTCAAGAAATAGGCCAGAATTTTGAGAAGGTAATGAAGTTATTTTTTCAGCACCTGGATGATCCCCATCATAAAGTCGCGCAGGCTGCTCTCTCCACCCTTGCAGATATTATTCTTATGTGCCGGAAGCCTTTTGAGGGTTACATGGAACGAATGTTACCTCATGTGTTTTCTCGATTAATTGACCCCAAAGAGCTTGTTAGGCAAGCATGCTCTATGACTTTGGAAGTTGTTAGCAAAACATACAGTATAGATTCTCTTTTACCTGCATTGTTACGCTCGCTAGATGAACAAAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAGTTTGCAATCAGTTCCTTTAATAAGCATGCAATGAATTCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCCAAGTTAGCCCCATTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGTATTATATCAGTGTACTCTCACTTTGATCCATCTGCAGTTTTGAATTTTATTCTTAGTTTGTCNGTTGATGAACAAAATTCTTTGAGACGAGCCCTCAAACAGCGCACCCCTCGCATTGAAGTAGACTTGATGAACTATCTGCAGAGCAAGAAAGAGCGGCGTTCTAAGTCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGAGGGATATACTGGTTTGTCTAGGAAAGCTCATTACATTGGAAGGTATTCTGCTGGTTCTCTAGATGGTGATGGTGGCAGGAAATGGAGTTCCCAAGATTCAATCCTGCCTAAAGCCAGTCTTGGCCAACCTGCTTCTGATGAAACTGAGGAACAATCATATCAGAATCTTNGGACTGATTCTAATAATGATATTCTTGCCTCAAAAACTAATGATCTTGCTTACTCAGTCACTTCAATGGATCAAGGCTTTGGTTTTCAAACTAGCCAACTTGGNCATGTGGACAGTAGCACGAATTTTGAAGGTCTGTCATCTGATATGGATGTTAATGCTCTGACGTCATTAGAACATATAAATATTGCTGAAGGCTTTGGACATGACAAAGAACATCCTTCTGAATTTAACTATAGCCATCACTCAGCTCAAGATGTGAAGGTTGACTCCATGACAGACACAGGGCTCAGCATTCCTCAAATTCTTCATATGATATGCAGTGTGGGTGATGGAAGCCCTAGTTCAANGAAGCGGACTGCACTTCTACAGTTAGTTGAAGCTTCTGTAGCAAATGATCATTCTTACTTCAATCAGATTTTGACAGCTGTGCTTGAGGTGTTGGATGATTCAGATTTTTCAATCAGAGAGCTTGCTCTTTCATTGATAGTTGAAATGCTTAAAAACCAGAAAGATGCCATGGAAAATTCAGTTGAGATTGTAATTGAAAAACTGCTTAATGTTACAAAGGATACTGTTCCCAAGGTCTCANATGAAGCGGAACACTGCCTGACAATTATTTTATCTCAGGATGATCCATTCAGATGTTTAACTGTTATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACTCTTGTCACTTGCATAAATTGCTTGACTAAGATTGTGGGGCGGCTCTCTCAGGAGGAACTGATGTCTCAGTTGCCCTCATTTCTGCCTGCTTTGTTTGAAGCTTTTGGAAACCAGAGTGCGGATGTTCGTAAGACTGTTGTTTTCTGTCTAGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGGAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTANGCAAATAGAATCTCACAGGCAAGGACAGGAAAATCAATTGATGCTGCTCACGGTTAGCAGGGTTCATTGGGAAAGAAAGTTGTGGGTTTTGATTGTTTTCTTATTTATTTGTTGTGTATTTTGTATATTTGCGTGCATGAAATTTTTTAGGTGGGTTTTCATTTGTTTCCTTTCTCACCTTTTATCTTATATTTTTGTTTTTTGTCTTCCTTTTTCCCTGCCGATGANTGTCGGATTTGGAGAGTGAGTG

Protein Sequence

>Glyur000971s00030741.1
MEEALELARAKDAKERMAGVERLHQVLEASRRSLSSVEVTSLVDCCLDLLKDTSFRVSQGALQALASAAVLSGEXFKLHFNTLVPSVVDRLGDAKXPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTCKSWRVREEFARTVTSAIGLFSSTELPLQRAILPPILQLLSDPNPAVREAAILCIEVKAINARLEGIQPKVQSSNGISSGYMAGEINPVNVNPKKSSPKAKSSSXENSLFGGEGDVTAIDPIKVYSEKELIREVEKIASTLVPEKDWSIRXAAMQRIEGLVLGGAVDYPCFFGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAEVFIPVLLKLVVITVLVIAESADNCIKTMVRNCKVARVLPRIADCAKNDRSAILRARCCDYALLILEHWPDAPEIQRSAELYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPSIQRLINEEDGGKHRRHASPSIRDRSALMXLTSQASAPSNLTGYGTSAIVAMDRSSSLSSGTSISSGVLLSQAKSLGKGTERSLDSVLHASKQKVTAIESMLRGLDLYDKHNSSALRSSSLDLGVDPPSSRDPPFPAAVSASNRLTSSLTIESTAPSVNKGNNRNGGLGLSDIITQIQASKDSGKLXYNRNVGIEPLSTFSSYASKRATDKLQERSSVDENSDIRETRRYXNANIDRQYTDTLYKDSNFRDSHNSYVPNFQRPLLRKNVAARVSAGRRRSFDDSQLSLGEMSNFADGPASLHEALHEGLSSGSDWSARVAAFNYLHSLLEQGQKGIQEIGQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIILMCRKPFEGYMERMLPHVFSRLIDPKELVRQACSMTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNSEGAANIGILKLWLAKLAPLVHDKNTKLKEAAITCIISVYSHFDPSAVLNFILSLSVDEQNSLRRALKQRTPRIEVDLMNYLQSKKERRSKSSYDPSDVVGTSSEEGYTGLSRKAHYIGRYSAGSLDGDGGRKWSSQDSILPKASLGQPASDETEEQSYQNLXTDSNNDILASKTNDLAYSVTSMDQGFGFQTSQLGHVDSSTNFEGLSSDMDVNALTSLEHINIAEGFGHDKEHPSEFNYSHHSAQDVKVDSMTDTGLSIPQILHMICSVGDGSPSSXKRTALLQLVEASVANDHSYFNQILTAVLEVLDDSDFSIRELALSLIVEMLKNQKDAMENSVEIVIEKLLNVTKDTVPKVSXEAEHCLTIILSQDDPFRCLTVIVPLLVTEDEKTLVTCINCLTKIVGRLSQEELMSQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLKLVTIXANRISQARTGKSIDAAHG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00971	21175	37141	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000971s00030741.1	PF02985.17	HEAT	160	183	2.80E-06
Glyur000971s00030741.1	PF12348.3	CLASP_N	260	475	4.90E-55
Glyur000971s00030741.1	PF12348.3	CLASP_N	778	971	9.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.937
SRR1783600	control	15.862
SRR1783602	moderate drought stress	10.363
SRR1811619	moderate drought stress	10.260

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.137
DRR006520	Root Summer glycyrrhizin high producing strain	12.387
DRR006521	Root Winter glycyrrhizin high producing strain	5.854
DRR006522	Root Winter glycyrrhizin high producing strain	5.855
DRR006523	Root Summer glycyrrhizin low producing strain	18.732
DRR006524	Root Summer glycyrrhizin low producing strain	18.570
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.404
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.238
SRR2868004	Drought Stress (root)	23.677
SRR2967015	Control (root)	24.685

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.701
SRR9715740	Leaf	9.469
SRR9715741	Leaf	10.339
SRR9715739	Root	7.568
SRR9715742	Root	26.643
SRR9715743	Root	22.610

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.775
SRR8749028	MeJA induced 9h	15.202
SRR8749029	MeJA induced 9h	8.697
SRR8749030	Uninduced	3.337
SRR8749031	Uninduced	2.012
SRR8749032	Uninduced	2.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.850
SRR8400027	Control - Root	39.353